Wall clock time and date at job start Sun Mar 29 2020 21:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47314 * 270.00261 * 3 2 1 5 5 H 1.48503 * 109.46875 * 30.00302 * 3 2 1 6 6 H 1.48500 * 109.46679 * 150.00309 * 3 2 1 7 7 C 1.37880 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99777 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00020 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47309 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47499 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00375 * 180.02562 * 12 11 10 14 14 O 1.21716 * 119.99816 * 359.97438 * 13 12 11 15 15 C 1.46267 * 120.00129 * 180.02562 * 13 12 11 16 16 C 1.35118 * 126.72414 * 179.68786 * 15 13 12 17 17 C 1.45716 * 110.36422 * 180.25905 * 16 15 13 18 18 C 1.33198 * 110.83923 * 359.97438 * 17 16 15 19 19 C 1.51197 * 107.14403 * 359.97438 * 18 17 16 20 20 H 0.97000 * 120.00079 * 359.97438 * 1 2 3 21 21 H 1.09009 * 109.46751 * 60.00008 * 9 7 2 22 22 H 1.09002 * 109.47403 * 300.00189 * 9 7 2 23 23 H 1.09004 * 109.46942 * 60.00703 * 10 9 7 24 24 H 1.09002 * 109.47532 * 300.00152 * 10 9 7 25 25 H 1.09004 * 109.46624 * 60.00411 * 11 10 9 26 26 H 1.09002 * 109.47327 * 300.00189 * 11 10 9 27 27 H 0.97003 * 119.99790 * 359.97438 * 12 11 10 28 28 H 1.08004 * 124.81931 * 0.25445 * 16 15 13 29 29 H 1.08004 * 124.57966 * 179.97438 * 17 16 15 30 30 H 1.08002 * 126.42640 * 179.97438 * 18 17 16 31 31 H 1.09001 * 110.31847 * 241.09711 * 19 18 17 32 32 H 1.08997 * 110.40152 * 118.94906 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0009 12 7 6.0399 -4.0178 -0.0014 13 6 7.3649 -4.2641 -0.0010 14 8 8.1559 -3.3390 -0.0006 15 6 7.8525 -5.6432 -0.0020 16 6 9.1428 -6.0439 -0.0076 17 6 9.2219 -7.4989 -0.0129 18 6 8.0046 -8.0396 -0.0103 19 6 7.0108 -6.9002 -0.0020 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6805 0.8889 22 1 3.8746 -0.6801 -0.8911 23 1 3.6579 -3.1506 -0.8908 24 1 3.6585 -3.1503 0.8892 25 1 5.9148 -2.1228 0.8891 26 1 5.9149 -2.1229 -0.8909 27 1 5.4095 -4.7551 -0.0014 28 1 9.9947 -5.3801 -0.0082 29 1 10.1431 -8.0628 -0.0183 30 1 7.7712 -9.0941 -0.0134 31 1 6.3932 -6.9431 0.8951 32 1 6.3849 -6.9354 -0.8937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199695395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:21 Heat of formation + Delta-G solvation = -36.165743 kcal Electronic energy + Delta-G solvation = -13937.165292 eV Core-core repulsion = 11475.962256 eV Total energy + Delta-G solvation = -2461.203035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08332 -39.14301 -36.99867 -35.16675 -33.35081 -30.58739 -29.15885 -28.47729 -25.03343 -23.00766 -22.22107 -20.37172 -19.70212 -18.91526 -18.23158 -17.00364 -16.77591 -16.28407 -15.69616 -15.65773 -14.79199 -14.72814 -14.33763 -13.83722 -13.64212 -13.31748 -12.88679 -12.75425 -12.71497 -12.39310 -11.93757 -11.79015 -11.60788 -11.33965 -11.16380 -11.07883 -10.76375 -10.19597 -9.43021 -8.29683 -6.33486 -0.13036 1.36797 1.38468 1.50233 1.59114 2.21748 2.36206 2.39920 3.06124 3.52730 3.73265 4.04800 4.12693 4.18347 4.28579 4.48487 4.65960 4.71868 4.85735 4.86921 4.88961 5.02909 5.22346 5.35197 5.38755 5.42193 5.48586 5.54757 5.64755 5.88881 6.27084 6.55132 6.74560 7.18775 7.31429 8.86685 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.063758 B = 0.004488 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.056041 B = 6237.677697 C = 6645.624515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.125 3.875 12 N -0.709 5.709 13 C 0.566 3.434 14 O -0.596 6.596 15 C -0.231 4.231 16 C -0.053 4.053 17 C -0.176 4.176 18 C -0.114 4.114 19 C -0.088 4.088 20 H 0.266 0.734 21 H 0.020 0.980 22 H 0.019 0.981 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.415 0.585 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.180 0.820 31 H 0.127 0.873 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.274 -16.697 -0.011 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.001 3.999 12 N -0.360 5.360 13 C 0.356 3.644 14 O -0.479 6.479 15 C -0.234 4.234 16 C -0.073 4.073 17 C -0.194 4.194 18 C -0.131 4.131 19 C -0.123 4.123 20 H 0.075 0.925 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.252 0.748 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.197 0.803 31 H 0.144 0.856 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.633 -15.921 -0.009 23.025 hybrid contribution -0.356 0.858 -0.017 0.929 sum 16.277 -15.063 -0.025 22.178 Atomic orbital electron populations 1.70055 1.08183 1.28139 1.52689 1.25972 0.95584 1.03388 0.94224 0.85708 0.79494 0.78591 0.79185 1.19244 1.20979 1.17253 1.21458 0.91830 0.93313 1.50244 0.94276 1.19475 0.94150 0.94663 0.96807 1.21483 0.91699 0.98215 1.02343 1.21343 0.94614 0.82520 1.01398 1.45831 1.06670 1.09484 1.73974 1.17939 0.82225 0.88643 0.75566 1.90785 1.56696 1.47366 1.53066 1.22104 0.97645 0.92778 1.10910 1.23059 0.96120 0.96440 0.91711 1.22405 1.00144 0.91912 1.04943 1.24605 0.93660 1.00114 0.94769 1.20556 0.98543 0.88418 1.04789 0.92489 0.96127 0.96228 0.91503 0.91528 0.92456 0.92389 0.74773 0.85652 0.83014 0.80253 0.85592 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.31 5.47 84.65 0.46 0.77 16 3 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.53 -30.09 9.66 25.60 0.25 -29.84 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 11 C 0.13 4.09 5.67 86.38 0.49 4.58 16 12 N -0.71 -19.21 5.55 -467.49 -2.59 -21.80 16 13 C 0.57 17.07 7.77 86.33 0.67 17.74 16 14 O -0.60 -23.32 16.88 -4.40 -0.07 -23.39 16 15 C -0.23 -5.19 6.33 -18.31 -0.12 -5.31 16 16 C -0.05 -1.11 10.53 23.48 0.25 -0.87 16 17 C -0.18 -2.45 10.74 23.07 0.25 -2.20 16 18 C -0.11 -1.20 11.21 24.71 0.28 -0.92 16 19 C -0.09 -1.17 6.08 29.44 0.18 -0.99 16 20 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 21 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 22 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.42 8.50 7.84 -92.71 -0.73 7.77 16 28 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 31 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.01 279.32 2.82 -70.18 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.32 Total: 8.56 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 2.99 Total: -20.95 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -2.30 Total: -80.81 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.07 Total: -23.39 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -73.01 2.82 -70.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199695395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.017 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds