Wall clock time and date at job start Sun Mar 29 2020 21:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21716 * 120.00000 * 0.02562 * 14 13 3 16 16 C 1.46264 * 119.99946 * 179.97438 * 14 13 3 17 17 C 1.35119 * 126.72529 * 179.68771 * 16 14 13 18 18 C 1.45722 * 110.36721 * 179.90362 * 17 16 14 19 19 C 1.33197 * 110.83646 * 0.38552 * 18 17 16 20 20 C 1.51209 * 107.14189 * 359.78086 * 19 18 17 21 21 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 22 22 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 24 24 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 25 25 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 27 27 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 28 28 H 1.07999 * 124.81976 * 0.03784 * 17 16 14 29 29 H 1.07997 * 124.58115 * 180.16372 * 18 17 16 30 30 H 1.07996 * 126.42679 * 179.78004 * 19 18 17 31 31 H 1.09002 * 110.31594 * 241.09375 * 20 19 18 32 32 H 1.09008 * 110.31400 * 118.90649 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5600 -0.3407 -0.7622 11 1 6.3799 0.9274 -2.8214 12 1 6.5537 2.0834 -0.6967 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3424 2.6318 0.4311 16 6 0.0479 3.3177 2.6171 17 6 -1.1277 3.9304 2.8781 18 6 -1.1343 4.4575 4.2366 19 6 0.0200 4.2012 4.8498 20 6 0.8877 3.4455 3.8688 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 3.8296 -0.0660 -2.9471 27 1 2.2719 2.1230 1.9979 28 1 -1.9472 4.0154 2.1798 29 1 -1.9617 4.9877 4.6844 30 1 0.2862 4.4806 5.8585 31 1 1.1331 2.4591 4.2623 32 1 1.7979 4.0070 3.6580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199702117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:21 Heat of formation + Delta-G solvation = -7.245814 kcal Electronic energy + Delta-G solvation = -14873.452571 eV Core-core repulsion = 12413.503598 eV Total energy + Delta-G solvation = -2459.948973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57316 -37.81485 -34.97414 -32.37048 -31.01833 -29.02559 -27.92193 -26.78249 -23.27642 -21.93781 -19.77707 -19.04470 -18.51892 -17.22965 -16.02071 -15.32861 -14.73539 -14.64117 -13.96406 -13.73934 -12.91717 -12.68440 -12.34327 -11.98740 -11.73519 -11.52161 -11.38157 -11.23072 -10.97660 -10.81633 -10.31098 -10.16400 -10.13632 -9.61670 -9.10238 -9.01286 -8.49422 -8.36994 -7.76761 -6.11627 -4.21159 1.08659 2.78108 3.24442 3.31445 3.33514 4.04675 4.15375 4.40284 4.67393 4.81973 5.16826 5.19807 5.46857 5.62582 5.63677 5.86400 6.27988 6.40990 6.42240 6.49210 6.53946 6.69335 6.88139 7.07226 7.23093 7.39080 7.47383 7.63653 7.76263 7.92092 8.19522 8.69652 8.79231 9.16313 9.46390 10.93706 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038305 B = 0.007340 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.790916 B = 3813.607719 C = 4306.390519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.556 3.444 15 O -0.548 6.548 16 C -0.181 4.181 17 C -0.077 4.077 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.088 4.088 21 H 0.049 0.951 22 H 0.022 0.978 23 H 0.038 0.962 24 H 0.100 0.900 25 H 0.031 0.969 26 H 0.264 0.736 27 H 0.388 0.612 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 4.631 11.839 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.343 3.657 15 O -0.429 6.429 16 C -0.184 4.184 17 C -0.096 4.096 18 C -0.168 4.168 19 C -0.172 4.172 20 C -0.123 4.123 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.118 0.882 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.126 0.874 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.388 4.481 10.938 12.609 hybrid contribution 1.224 0.000 0.296 1.259 sum -3.165 4.481 11.234 12.502 Atomic orbital electron populations 1.21844 0.98355 0.98033 1.01297 1.21938 0.92626 0.99751 1.02297 1.18814 0.94218 0.89234 0.81002 0.93230 1.21230 0.90703 1.38922 1.06409 0.92100 1.24890 0.98606 0.94826 0.95359 1.69897 1.35119 1.37460 1.09470 0.86454 0.84874 0.78419 0.77390 1.20544 1.21065 1.19885 1.46406 1.14369 1.55484 1.18503 1.17353 0.82945 0.79233 0.86187 1.90790 1.51723 1.60451 1.39902 1.22537 0.97504 1.02786 0.95597 1.22687 0.97029 0.94789 0.95143 1.22235 0.98565 1.01622 0.94382 1.24132 0.95593 0.98575 0.98938 1.20443 0.99070 1.01057 0.91769 0.93138 0.95847 0.94257 0.88225 0.95044 0.92555 0.77983 0.84779 0.85454 0.84001 0.87378 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.84 2.24 -69.08 -0.16 6.69 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.77 11.28 55.43 0.63 -24.15 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.81 5.02 -56.37 -0.28 -15.09 16 14 C 0.56 11.57 6.34 -13.04 -0.08 11.49 16 15 O -0.55 -13.34 14.01 5.17 0.07 -13.27 16 16 C -0.18 -2.96 6.33 -102.23 -0.65 -3.61 16 17 C -0.08 -1.13 10.53 -37.70 -0.40 -1.53 16 18 C -0.15 -1.74 10.74 -38.35 -0.41 -2.15 16 19 C -0.15 -1.62 11.21 -35.82 -0.40 -2.03 16 20 C -0.09 -1.08 6.08 -28.51 -0.17 -1.25 16 21 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 24 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.39 7.08 7.90 -40.82 -0.32 6.76 16 28 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.24 8.14 -51.92 -0.42 0.81 16 LS Contribution 270.32 15.07 4.07 4.07 Total: -1.00 -30.27 270.32 -7.25 -37.52 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.23 Total: 6.62 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.49 Total: -11.25 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.34 Total: -39.24 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.27 -7.25 -37.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199702117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.275 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds