Wall clock time and date at job start Sun Mar 29 2020 21:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21716 * 120.00000 * 0.02562 * 14 13 3 16 16 C 1.46264 * 119.99946 * 179.97438 * 14 13 3 17 17 C 1.35119 * 126.72529 * 179.68771 * 16 14 13 18 18 C 1.45722 * 110.36721 * 179.90362 * 17 16 14 19 19 C 1.33197 * 110.83646 * 0.38552 * 18 17 16 20 20 C 1.51209 * 107.14189 * 359.78086 * 19 18 17 21 21 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 22 22 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 24 24 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 25 25 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 27 27 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 28 28 H 1.07999 * 124.81976 * 0.03784 * 17 16 14 29 29 H 1.07997 * 124.58115 * 180.16372 * 18 17 16 30 30 H 1.07996 * 126.42679 * 179.78004 * 19 18 17 31 31 H 1.09002 * 110.31594 * 241.09375 * 20 19 18 32 32 H 1.09008 * 110.31400 * 118.90649 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5600 -0.3407 -0.7622 11 1 6.3799 0.9274 -2.8214 12 1 6.5537 2.0834 -0.6967 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3424 2.6318 0.4311 16 6 0.0479 3.3177 2.6171 17 6 -1.1277 3.9304 2.8781 18 6 -1.1343 4.4575 4.2366 19 6 0.0200 4.2012 4.8498 20 6 0.8877 3.4455 3.8688 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 3.8296 -0.0660 -2.9471 27 1 2.2719 2.1230 1.9979 28 1 -1.9472 4.0154 2.1798 29 1 -1.9617 4.9877 4.6844 30 1 0.2862 4.4806 5.8585 31 1 1.1331 2.4591 4.2623 32 1 1.7979 4.0070 3.6580 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199702117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:21 Heat of formation + Delta-G solvation = -26.703902 kcal Electronic energy + Delta-G solvation = -14874.296337 eV Core-core repulsion = 12413.503598 eV Total energy + Delta-G solvation = -2460.792739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00516 -39.13946 -36.87446 -34.30795 -32.89478 -30.27898 -29.10191 -28.49989 -25.18215 -23.52055 -21.53915 -20.46132 -19.79174 -18.60962 -17.73411 -17.18208 -16.36702 -16.30047 -15.49692 -14.95504 -14.63903 -14.38440 -13.78285 -13.48083 -13.28674 -13.16877 -12.98038 -12.73524 -12.66055 -12.35491 -12.17914 -12.05779 -11.61403 -11.11515 -11.06533 -10.80156 -10.53250 -9.73055 -9.32444 -8.16247 -6.34152 -0.02674 1.45131 1.46035 1.56494 1.70995 2.36680 2.57577 2.70319 3.13235 3.64896 3.81620 4.18337 4.34757 4.46963 4.55056 4.68971 4.73913 4.74333 4.90981 5.04068 5.20168 5.33297 5.40026 5.42164 5.47303 5.55353 5.61679 5.78587 5.92592 5.96968 6.15767 6.73590 7.00142 7.32892 7.57343 8.89384 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038305 B = 0.007340 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.790916 B = 3813.607719 C = 4306.390519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.276 3.724 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.973 3.027 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.697 5.697 14 C 0.553 3.447 15 O -0.597 6.597 16 C -0.225 4.225 17 C -0.064 4.064 18 C -0.170 4.170 19 C -0.116 4.116 20 C -0.087 4.087 21 H 0.024 0.976 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.122 0.878 29 H 0.155 0.845 30 H 0.184 0.816 31 H 0.123 0.877 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 5.286 14.852 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.344 5.344 14 C 0.343 3.657 15 O -0.481 6.481 16 C -0.228 4.228 17 C -0.084 4.084 18 C -0.188 4.188 19 C -0.133 4.133 20 C -0.123 4.123 21 H 0.043 0.957 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.140 0.860 29 H 0.173 0.827 30 H 0.201 0.799 31 H 0.140 0.860 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.385 5.147 13.998 15.294 hybrid contribution 0.829 -0.150 -0.616 1.044 sum -2.555 4.998 13.382 14.512 Atomic orbital electron populations 1.21679 0.97188 0.99136 1.00109 1.21789 0.93581 0.99134 1.01439 1.18409 0.93837 0.89202 0.81267 0.98597 1.21571 0.91232 1.38943 1.06933 0.90915 1.25804 1.03495 0.94314 0.94925 1.70055 1.37164 1.38198 1.10016 0.85337 0.78863 0.78932 0.77150 1.19523 1.21299 1.18855 1.46126 1.15168 1.55555 1.17583 1.18016 0.81983 0.78395 0.87330 1.90755 1.52906 1.62264 1.42145 1.22283 0.99702 1.05350 0.95485 1.23020 0.95821 0.92826 0.96773 1.22375 1.00495 1.03265 0.92618 1.24561 0.93895 0.95164 0.99716 1.20532 0.99136 1.02421 0.90164 0.95675 0.93402 0.94076 0.90803 0.93897 0.92563 0.76147 0.86031 0.82690 0.79891 0.85960 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 2 C -0.12 -6.10 5.45 30.60 0.17 -5.93 16 3 C 0.28 14.56 2.24 44.24 0.10 14.66 16 4 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.61 7.74 -2.92 -0.02 3.59 16 7 C 0.01 0.79 5.30 84.66 0.45 1.24 16 8 N -0.92 -52.92 11.28 21.45 0.24 -52.68 16 9 Si 0.97 42.07 29.54 68.60 2.03 44.09 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 N -0.70 -29.94 5.02 -450.47 -2.26 -32.20 16 14 C 0.55 23.64 6.34 86.33 0.55 24.19 16 15 O -0.60 -30.64 14.01 -4.40 -0.06 -30.70 16 16 C -0.23 -7.20 6.33 -18.31 -0.12 -7.32 16 17 C -0.06 -1.84 10.53 23.49 0.25 -1.59 16 18 C -0.17 -3.33 10.74 23.07 0.25 -3.08 16 19 C -0.12 -1.88 11.21 24.71 0.28 -1.60 16 20 C -0.09 -1.87 6.08 29.44 0.18 -1.69 16 21 H 0.02 1.26 7.84 -2.39 -0.02 1.25 16 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 24 H 0.07 4.15 5.94 -2.39 -0.01 4.13 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.40 14.52 7.90 -92.71 -0.73 13.78 16 28 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -68.68 270.32 3.26 -65.42 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.38 Total: 21.49 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 2.93 Total: -15.43 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.02 Total: -84.87 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.06 Total: -30.70 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.68 3.26 -65.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199702117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.713 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds