Wall clock time and date at job start Sun Mar 29 2020 22:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34120 * 125.98686 * 2 1 4 4 C 1.30504 * 109.25474 * 179.97438 * 3 2 1 5 5 N 1.35042 * 108.69855 * 0.02562 * 4 3 2 6 6 H 0.96999 * 126.39641 * 179.97438 * 5 4 3 7 7 C 1.34663 * 125.98911 * 179.97438 * 2 1 3 8 8 C 1.50707 * 126.59379 * 0.02562 * 7 2 1 9 9 N 1.46897 * 109.47370 * 79.99409 * 8 7 2 10 10 C 1.47480 * 111.00373 * 265.97430 * 9 8 7 11 11 C 1.53514 * 87.93100 * 221.29632 * 10 9 8 12 12 C 1.50701 * 114.34086 * 139.67966 * 11 10 9 13 13 H 1.07994 * 120.00358 * 266.07931 * 12 11 10 14 14 C 1.37888 * 119.99365 * 86.07557 * 12 11 10 15 15 N 1.31505 * 120.00515 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99580 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47016 * 60.00072 * 16 14 12 18 18 H 1.48492 * 109.47101 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47205 * 300.00144 * 16 14 12 20 20 C 1.47479 * 110.99941 * 169.99907 * 9 8 7 21 21 H 1.09000 * 109.47147 * 90.02316 * 1 2 3 22 22 H 1.09001 * 109.46955 * 210.02066 * 1 2 3 23 23 H 1.08996 * 109.47090 * 330.02068 * 1 2 3 24 24 H 1.08001 * 125.64551 * 179.73478 * 4 3 2 25 25 H 1.09003 * 109.46901 * 199.99680 * 8 7 2 26 26 H 1.08998 * 109.47005 * 319.99490 * 8 7 2 27 27 H 1.08995 * 113.47023 * 336.06295 * 10 9 8 28 28 H 1.08996 * 113.47676 * 106.52414 * 10 9 8 29 29 H 1.08998 * 114.16851 * 272.37250 * 11 10 9 30 30 H 0.96996 * 120.00141 * 179.97438 * 15 14 12 31 31 H 1.09002 * 113.47688 * 253.47383 * 20 9 8 32 32 H 1.08996 * 113.47696 * 23.88108 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5913 -0.6401 0.0004 6 1 4.3913 -1.1885 0.0003 7 6 2.2984 -1.0896 0.0005 8 6 1.8473 -2.5276 0.0006 9 7 1.4716 -2.9231 -1.3633 10 6 0.0239 -2.7491 -1.5843 11 6 0.0344 -4.0872 -2.3367 12 6 -1.1569 -4.9666 -2.0567 13 1 -1.1017 -5.7215 -1.2864 14 6 -2.3175 -4.8073 -2.7840 15 7 -2.3850 -3.8877 -3.7216 16 14 -3.7940 -5.8979 -2.4375 17 1 -4.2254 -5.7138 -1.0284 18 1 -4.9068 -5.5286 -3.3487 19 1 -3.4232 -7.3185 -2.6601 20 6 1.2533 -4.3790 -1.4502 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 4.4004 1.3688 -0.0034 25 1 2.6599 -3.1632 0.3524 26 1 0.9872 -2.6385 0.6609 27 1 -0.5615 -2.7724 -0.6652 28 1 -0.2193 -1.8963 -2.2181 29 1 0.2652 -4.0003 -3.3985 30 1 -3.2012 -3.7759 -4.2335 31 1 2.0520 -4.9076 -1.9705 32 1 0.9969 -4.8374 -0.4952 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204588990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:01 Heat of formation + Delta-G solvation = 86.610858 kcal Electronic energy + Delta-G solvation = -14889.526056 eV Core-core repulsion = 12465.939764 eV Total energy + Delta-G solvation = -2423.586291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.83693 -38.86600 -32.99549 -32.85941 -31.74469 -29.04188 -26.72922 -25.02380 -24.75308 -22.52035 -21.28142 -19.28072 -18.65651 -17.56082 -16.56936 -15.32907 -14.66609 -14.62371 -14.34935 -13.83067 -13.68356 -12.74519 -12.54131 -12.41460 -11.97543 -11.86839 -11.61605 -11.24035 -10.97081 -10.71357 -10.35509 -9.85512 -9.67479 -9.64031 -9.29165 -8.96239 -8.45590 -8.07361 -7.89412 -6.06123 -4.11316 2.26850 3.29581 3.31984 3.35343 3.36163 3.36983 4.39350 4.75797 4.97201 5.10771 5.24942 5.38959 5.49554 5.60718 5.78012 6.02786 6.16937 6.23304 6.30801 6.34762 6.41728 6.49536 6.62596 6.69887 7.03120 7.13430 7.17326 7.59169 7.70257 7.88276 8.02358 8.30444 8.35066 8.91608 9.53875 11.03339 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049720 B = 0.006624 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.019947 B = 4226.007781 C = 4508.261633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.007 3.993 3 N -0.494 5.494 4 C 0.172 3.828 5 N -0.565 5.565 6 H 0.416 0.584 7 C 0.004 3.996 8 C 0.092 3.908 9 N -0.481 5.481 10 C 0.010 3.990 11 C 0.041 3.959 12 C -0.519 4.519 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.007 4.007 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.203 0.797 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.263 0.737 31 H 0.061 0.939 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.369 4.184 7.586 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 N -0.214 5.214 4 C -0.112 4.112 5 N -0.169 5.169 6 H 0.253 0.747 7 C -0.112 4.112 8 C -0.038 4.038 9 N -0.204 5.204 10 C -0.119 4.119 11 C 0.022 3.978 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.135 4.135 15 N -0.522 5.522 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.135 4.135 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.220 0.780 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.425 5.454 7.041 12.967 hybrid contribution -0.459 -1.837 0.777 2.046 sum 8.966 3.617 7.818 12.433 Atomic orbital electron populations 1.20104 0.87704 1.01908 1.02766 1.20469 0.96456 0.87791 1.07447 1.70121 1.00567 1.30984 1.19770 1.24763 0.97265 0.82062 1.07111 1.43147 1.08148 1.08476 1.57091 0.74712 1.20947 0.83441 0.96921 1.09879 1.21003 1.00079 0.88592 0.94121 1.68942 1.20547 1.10409 1.20457 1.24153 0.85349 1.02340 1.00042 1.20095 0.91071 0.91397 0.95218 1.20974 0.96935 1.18412 1.19366 0.92478 1.25011 0.98733 0.95139 0.94609 1.69951 1.27727 1.32603 1.21895 0.86684 0.82244 0.81011 0.78212 1.20201 1.21221 1.20195 1.24045 1.00265 0.88763 1.00445 0.90854 0.91475 0.91885 0.78003 0.91538 0.91739 0.92565 0.91637 0.91855 0.92741 0.92028 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 9.10 36.01 0.33 -0.78 16 2 C 0.01 0.13 7.09 -82.86 -0.59 -0.46 16 3 N -0.49 -8.44 11.25 -10.87 -0.12 -8.56 16 4 C 0.17 2.26 13.04 -90.37 -1.18 1.08 16 5 N -0.56 -7.29 6.15 -10.30 -0.06 -7.35 16 6 H 0.42 3.90 8.96 -40.82 -0.37 3.53 16 7 C 0.00 0.06 6.82 -81.60 -0.56 -0.49 16 8 C 0.09 1.51 5.04 -4.97 -0.03 1.48 16 9 N -0.48 -9.48 6.32 -246.08 -1.55 -11.04 16 10 C 0.01 0.22 5.98 -7.54 -0.05 0.17 16 11 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 12 C -0.52 -13.81 8.83 -34.44 -0.30 -14.11 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 15 N -0.88 -25.27 13.26 55.43 0.74 -24.53 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.01 -0.13 7.25 -7.54 -0.05 -0.19 16 21 H 0.07 1.29 7.50 -51.93 -0.39 0.90 16 22 H 0.07 1.06 6.72 -51.93 -0.35 0.71 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 26 H 0.06 1.07 6.68 -51.93 -0.35 0.72 16 27 H 0.06 1.24 6.78 -51.93 -0.35 0.89 16 28 H 0.07 1.56 7.59 -51.93 -0.39 1.17 16 29 H 0.06 1.73 8.11 -51.93 -0.42 1.30 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 268.97 15.07 4.05 4.05 Total: -1.00 -30.76 268.97 -9.10 -39.85 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.26 Total: 2.72 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.86 Total: -10.87 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.00 Total: -51.48 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.76 -9.10 -39.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204588990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.463 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds