Wall clock time and date at job start Sun Mar 29 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34120 * 125.98686 * 2 1 4 4 C 1.30504 * 109.25474 * 179.97438 * 3 2 1 5 5 N 1.35042 * 108.69855 * 0.02562 * 4 3 2 6 6 H 0.96999 * 126.39641 * 179.97438 * 5 4 3 7 7 C 1.34663 * 125.98911 * 179.97438 * 2 1 3 8 8 C 1.50707 * 126.59379 * 0.02562 * 7 2 1 9 9 N 1.46897 * 109.47370 * 79.99409 * 8 7 2 10 10 C 1.47480 * 111.00373 * 265.97430 * 9 8 7 11 11 C 1.53514 * 87.93100 * 221.29632 * 10 9 8 12 12 C 1.50701 * 114.34086 * 139.67966 * 11 10 9 13 13 H 1.07994 * 120.00358 * 266.07931 * 12 11 10 14 14 C 1.37888 * 119.99365 * 86.07557 * 12 11 10 15 15 N 1.31505 * 120.00515 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99580 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47016 * 60.00072 * 16 14 12 18 18 H 1.48492 * 109.47101 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47205 * 300.00144 * 16 14 12 20 20 C 1.47479 * 110.99941 * 169.99907 * 9 8 7 21 21 H 1.09000 * 109.47147 * 90.02316 * 1 2 3 22 22 H 1.09001 * 109.46955 * 210.02066 * 1 2 3 23 23 H 1.08996 * 109.47090 * 330.02068 * 1 2 3 24 24 H 1.08001 * 125.64551 * 179.73478 * 4 3 2 25 25 H 1.09003 * 109.46901 * 199.99680 * 8 7 2 26 26 H 1.08998 * 109.47005 * 319.99490 * 8 7 2 27 27 H 1.08995 * 113.47023 * 336.06295 * 10 9 8 28 28 H 1.08996 * 113.47676 * 106.52414 * 10 9 8 29 29 H 1.08998 * 114.16851 * 272.37250 * 11 10 9 30 30 H 0.96996 * 120.00141 * 179.97438 * 15 14 12 31 31 H 1.09002 * 113.47688 * 253.47383 * 20 9 8 32 32 H 1.08996 * 113.47696 * 23.88108 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5913 -0.6401 0.0004 6 1 4.3913 -1.1885 0.0003 7 6 2.2984 -1.0896 0.0005 8 6 1.8473 -2.5276 0.0006 9 7 1.4716 -2.9231 -1.3633 10 6 0.0239 -2.7491 -1.5843 11 6 0.0344 -4.0872 -2.3367 12 6 -1.1569 -4.9666 -2.0567 13 1 -1.1017 -5.7215 -1.2864 14 6 -2.3175 -4.8073 -2.7840 15 7 -2.3850 -3.8877 -3.7216 16 14 -3.7940 -5.8979 -2.4375 17 1 -4.2254 -5.7138 -1.0284 18 1 -4.9068 -5.5286 -3.3487 19 1 -3.4232 -7.3185 -2.6601 20 6 1.2533 -4.3790 -1.4502 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5135 24 1 4.4004 1.3688 -0.0034 25 1 2.6599 -3.1632 0.3524 26 1 0.9872 -2.6385 0.6609 27 1 -0.5615 -2.7724 -0.6652 28 1 -0.2193 -1.8963 -2.2181 29 1 0.2652 -4.0003 -3.3985 30 1 -3.2012 -3.7759 -4.2335 31 1 2.0520 -4.9076 -1.9705 32 1 0.9969 -4.8374 -0.4952 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204588990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:00 Heat of formation + Delta-G solvation = 64.932930 kcal Electronic energy + Delta-G solvation = -14890.466081 eV Core-core repulsion = 12465.939764 eV Total energy + Delta-G solvation = -2424.526317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.98713 -40.54343 -34.87558 -34.02400 -33.25756 -30.54130 -28.32390 -26.59222 -26.45252 -24.11954 -22.44887 -20.57016 -20.39649 -18.87441 -18.34198 -16.86707 -16.44414 -16.04979 -15.72976 -15.40795 -15.11314 -14.16082 -13.88257 -13.80618 -13.71200 -13.33624 -13.15841 -12.89500 -12.80318 -12.45715 -12.13307 -11.67380 -11.23111 -10.89725 -10.86892 -10.72115 -10.47271 -9.71927 -9.13933 -8.12503 -6.24172 1.10645 1.45711 1.46593 1.54538 2.16646 2.31284 2.44890 3.17031 3.42532 3.72946 3.91285 4.07514 4.30715 4.33853 4.47980 4.49463 4.59324 4.69808 4.82517 4.86082 4.96561 5.05024 5.06040 5.22370 5.30824 5.53261 5.64679 5.81428 5.86855 6.30323 6.37145 6.65268 6.85703 7.17029 7.44673 8.97074 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049720 B = 0.006624 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.019947 B = 4226.007781 C = 4508.261633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.020 4.020 3 N -0.537 5.537 4 C 0.193 3.807 5 N -0.553 5.553 6 H 0.434 0.566 7 C -0.011 4.011 8 C 0.095 3.905 9 N -0.482 5.482 10 C 0.027 3.973 11 C 0.018 3.982 12 C -0.529 4.529 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.923 5.923 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.011 3.989 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.251 0.749 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.075 0.925 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.831 3.691 9.093 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.148 4.148 3 N -0.258 5.258 4 C -0.091 4.091 5 N -0.157 5.157 6 H 0.275 0.725 7 C -0.127 4.127 8 C -0.034 4.034 9 N -0.204 5.204 10 C -0.102 4.102 11 C -0.002 4.002 12 C -0.567 4.567 13 H 0.081 0.919 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.194 1.194 20 C -0.117 4.117 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.267 0.733 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.919 4.932 8.564 14.727 hybrid contribution -0.799 -1.615 0.309 1.828 sum 10.119 3.317 8.874 13.862 Atomic orbital electron populations 1.20021 0.88189 1.02362 1.01502 1.20662 0.96820 0.88808 1.08554 1.70102 1.02263 1.31478 1.21973 1.25702 0.97411 0.82524 1.03466 1.43097 1.07772 1.08731 1.56143 0.72502 1.20820 0.84745 0.96341 1.10808 1.20982 1.01061 0.89455 0.91903 1.68843 1.18297 1.09991 1.23281 1.23817 0.87394 0.99835 0.99135 1.20058 0.92928 0.93102 0.94070 1.21347 0.97673 1.18526 1.19198 0.91902 1.25831 1.01693 0.96447 0.94471 1.70092 1.28422 1.34490 1.23184 0.85636 0.78611 0.79325 0.78242 1.19258 1.21346 1.19358 1.23858 0.98453 0.89388 1.00002 0.92928 0.91362 0.91079 0.73298 0.88611 0.91806 0.92502 0.94295 0.95626 0.92918 0.90611 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.12 9.10 71.24 0.65 -1.47 16 2 C -0.02 -0.69 7.09 41.39 0.29 -0.40 16 3 N -0.54 -17.55 11.25 -188.32 -2.12 -19.67 16 4 C 0.19 4.46 13.04 180.26 2.35 6.81 16 5 N -0.55 -12.50 6.15 -186.49 -1.15 -13.65 16 6 H 0.43 6.44 8.96 -92.71 -0.83 5.61 16 7 C -0.01 -0.32 6.82 40.95 0.28 -0.04 16 8 C 0.10 2.93 5.04 85.56 0.43 3.36 16 9 N -0.48 -18.52 6.32 -932.46 -5.89 -24.41 16 10 C 0.03 1.24 5.98 83.58 0.50 1.74 16 11 C 0.02 0.88 3.76 -11.19 -0.04 0.84 16 12 C -0.53 -28.31 8.83 25.60 0.23 -28.08 16 13 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 14 C 0.01 0.82 5.46 84.66 0.46 1.28 16 15 N -0.92 -54.21 13.26 21.45 0.28 -53.92 16 16 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.01 0.45 7.25 83.58 0.61 1.05 16 21 H 0.05 1.94 7.50 -2.39 -0.02 1.93 16 22 H 0.07 2.20 6.72 -2.39 -0.02 2.19 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.25 2.99 8.06 -2.91 -0.02 2.96 16 25 H 0.10 2.39 8.08 -2.39 -0.02 2.37 16 26 H 0.06 1.99 6.68 -2.39 -0.02 1.98 16 27 H 0.06 2.54 6.78 -2.39 -0.02 2.52 16 28 H 0.04 1.94 7.59 -2.39 -0.02 1.92 16 29 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 30 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.07 2.53 7.87 -2.39 -0.02 2.51 16 Total: -1.00 -67.34 268.97 -0.80 -68.14 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.29 Total: 13.75 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.76 Total: -14.91 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -8.87 Total: -111.65 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.34 -0.80 -68.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204588990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.072 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds