Wall clock time and date at job start Sun Mar 29 2020 21:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38229 * 119.62230 * 2 1 4 4 C 1.38625 * 119.16334 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41932 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.41449 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47087 * 25.00477 * 6 5 4 8 8 C 1.52995 * 109.47049 * 265.00114 * 6 5 4 9 9 O 1.42906 * 109.46580 * 145.00219 * 6 5 4 10 10 C 1.42896 * 113.99618 * 209.99660 * 9 6 5 11 11 C 1.50698 * 109.47445 * 180.02562 * 10 9 6 12 12 H 1.08009 * 119.99348 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00394 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99981 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99754 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46916 * 90.00229 * 15 13 11 17 17 H 1.48497 * 109.47220 * 209.99415 * 15 13 11 18 18 H 1.48497 * 109.47490 * 330.00088 * 15 13 11 19 19 C 1.38172 * 119.16489 * 0.27960 * 5 4 3 20 20 N 1.31860 * 119.61597 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47086 * 90.00418 * 1 2 3 22 22 H 1.09000 * 109.47769 * 210.00264 * 1 2 3 23 23 H 1.09004 * 109.47162 * 330.00881 * 1 2 3 24 24 H 1.07997 * 120.41683 * 0.03781 * 3 2 1 25 25 H 1.07998 * 120.78871 * 180.02562 * 4 3 2 26 26 H 1.09007 * 109.47360 * 299.99872 * 8 6 5 27 27 H 1.08997 * 109.47379 * 60.00219 * 8 6 5 28 28 H 1.09002 * 109.47097 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.47350 * 300.00127 * 10 9 6 30 30 H 1.09004 * 109.47414 * 60.00345 * 10 9 6 31 31 H 0.97003 * 120.00081 * 179.97438 * 14 13 11 32 32 H 1.08002 * 119.62295 * 179.69595 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0005 6 6 5.7322 -0.0989 -0.0005 7 1 6.1351 0.8160 0.4339 8 6 6.2364 -0.2463 -1.4375 9 8 6.1608 -1.2220 0.7723 10 6 7.4293 -1.0420 1.4051 11 6 7.7805 -2.2808 2.1880 12 1 7.1028 -3.1218 2.2006 13 6 8.9667 -2.3408 2.8881 14 7 9.7920 -1.3171 2.8723 15 14 9.4015 -3.8762 3.8591 16 1 10.1550 -4.8150 2.9894 17 1 10.2394 -3.5027 5.0268 18 1 8.1561 -4.5317 4.3328 19 6 3.4766 -1.1948 -0.0059 20 7 2.1586 -1.1463 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5137 24 1 1.6508 2.1373 0.0006 25 1 4.1366 2.1138 -0.0001 26 1 5.8335 -1.1613 -1.8718 27 1 5.9095 0.6103 -2.0269 28 1 7.3254 -0.2935 -1.4374 29 1 8.1916 -0.8636 0.6467 30 1 7.3808 -0.1871 2.0796 31 1 10.6265 -1.3591 3.3651 32 1 3.9753 -2.1528 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:36 Heat of formation + Delta-G solvation = -28.477859 kcal Electronic energy + Delta-G solvation = -14411.665074 eV Core-core repulsion = 11950.795410 eV Total energy + Delta-G solvation = -2460.869664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13284 -37.20917 -33.62541 -32.53491 -32.11370 -30.25228 -27.25467 -26.95794 -23.64010 -22.99232 -21.98875 -20.61607 -16.79465 -16.55215 -15.99119 -15.18572 -14.99888 -14.51671 -14.22427 -13.99779 -13.66569 -12.97711 -12.61916 -12.45822 -12.22759 -12.13551 -11.99914 -11.47769 -11.30528 -10.87783 -10.78453 -10.56529 -10.09923 -9.62667 -9.21670 -9.12103 -8.93610 -8.54553 -8.21012 -6.13542 -4.15315 1.29660 1.46503 3.29572 3.34744 3.40304 3.94971 4.30954 4.46154 4.65277 4.85595 5.10578 5.23247 5.24339 5.31154 5.52839 5.54572 5.63158 5.63627 5.72536 5.91130 5.99227 6.10498 6.20728 6.35599 6.46995 6.60689 6.93636 7.05839 7.38692 7.76774 8.10512 8.21489 8.51196 8.97329 9.49680 10.97904 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042831 B = 0.005785 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.581456 B = 4838.967940 C = 5180.916255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.112 3.888 3 C -0.177 4.177 4 C -0.071 4.071 5 C -0.127 4.127 6 C 0.127 3.873 7 H 0.062 0.938 8 C -0.165 4.165 9 O -0.385 6.385 10 C 0.196 3.804 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.907 3.093 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.132 3.868 20 N -0.489 5.489 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.008 0.992 30 H 0.006 0.994 31 H 0.264 0.736 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 5.890 -6.891 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.097 4.097 5 C -0.129 4.129 6 C 0.067 3.933 7 H 0.080 0.920 8 C -0.222 4.222 9 O -0.305 6.305 10 C 0.122 3.878 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.025 4.025 20 N -0.198 5.198 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.326 5.000 -6.789 15.769 hybrid contribution 1.158 0.416 0.545 1.346 sum -12.168 5.415 -6.244 14.709 Atomic orbital electron populations 1.20660 0.89273 1.03161 1.02665 1.21271 0.96850 0.88683 0.95737 1.21818 0.94632 0.99029 1.04242 1.21411 0.94303 0.97739 0.96218 1.20989 0.97060 0.94202 1.00689 1.20576 0.88388 0.91941 0.92360 0.91994 1.22235 1.02146 1.01688 0.96142 1.87897 1.40275 1.36582 1.65728 1.20272 0.78751 0.97513 0.91265 1.21050 1.04205 1.00848 1.29262 0.91477 1.24934 0.95816 0.97030 0.96613 1.69956 1.10950 1.30295 1.42572 0.86340 0.78497 0.82401 0.79302 1.20417 1.21077 1.19587 1.22699 0.88289 0.99042 0.92476 1.67594 1.10161 1.29153 1.12929 0.90786 0.90648 0.91055 0.85184 0.85007 0.92051 0.92688 0.91584 0.97453 0.97659 0.92627 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.17 36.00 0.37 -0.63 16 2 C 0.11 1.56 6.78 -82.59 -0.56 1.00 16 3 C -0.18 -2.24 9.74 -39.44 -0.38 -2.63 16 4 C -0.07 -0.99 9.84 -39.28 -0.39 -1.38 16 5 C -0.13 -2.14 5.02 -104.48 -0.52 -2.66 16 6 C 0.13 2.34 2.95 -27.88 -0.08 2.26 16 7 H 0.06 1.12 7.71 -51.93 -0.40 0.72 16 8 C -0.16 -2.64 9.51 37.16 0.35 -2.29 16 9 O -0.38 -9.04 9.15 -35.23 -0.32 -9.36 16 10 C 0.20 5.27 5.50 36.00 0.20 5.47 16 11 C -0.52 -15.04 9.43 -34.44 -0.32 -15.37 16 12 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 15 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.13 2.31 10.52 -17.55 -0.18 2.12 16 20 N -0.49 -8.17 10.27 -9.48 -0.10 -8.26 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.55 8.08 -51.93 -0.42 0.14 16 24 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 25 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 29 H 0.01 0.21 7.87 -51.93 -0.41 -0.20 16 30 H 0.01 0.16 8.09 -51.93 -0.42 -0.26 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.16 2.93 7.65 -52.49 -0.40 2.52 16 LS Contribution 280.55 15.07 4.23 4.23 Total: -1.00 -31.47 280.55 -6.64 -38.11 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.54 Total: -3.01 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.63 Total: -12.55 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.64 Total: -34.19 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.32 Total: -9.36 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.47 -6.64 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.635 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds