Wall clock time and date at job start Sun Mar 29 2020 21:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38229 * 119.62230 * 2 1 4 4 C 1.38625 * 119.16334 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.41932 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.41449 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47087 * 25.00477 * 6 5 4 8 8 C 1.52995 * 109.47049 * 265.00114 * 6 5 4 9 9 O 1.42906 * 109.46580 * 145.00219 * 6 5 4 10 10 C 1.42896 * 113.99618 * 209.99660 * 9 6 5 11 11 C 1.50698 * 109.47445 * 180.02562 * 10 9 6 12 12 H 1.08009 * 119.99348 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00394 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99981 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99754 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46916 * 90.00229 * 15 13 11 17 17 H 1.48497 * 109.47220 * 209.99415 * 15 13 11 18 18 H 1.48497 * 109.47490 * 330.00088 * 15 13 11 19 19 C 1.38172 * 119.16489 * 0.27960 * 5 4 3 20 20 N 1.31860 * 119.61597 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47086 * 90.00418 * 1 2 3 22 22 H 1.09000 * 109.47769 * 210.00264 * 1 2 3 23 23 H 1.09004 * 109.47162 * 330.00881 * 1 2 3 24 24 H 1.07997 * 120.41683 * 0.03781 * 3 2 1 25 25 H 1.07998 * 120.78871 * 180.02562 * 4 3 2 26 26 H 1.09007 * 109.47360 * 299.99872 * 8 6 5 27 27 H 1.08997 * 109.47379 * 60.00219 * 8 6 5 28 28 H 1.09002 * 109.47097 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.47350 * 300.00127 * 10 9 6 30 30 H 1.09004 * 109.47414 * 60.00345 * 10 9 6 31 31 H 0.97003 * 120.00081 * 179.97438 * 14 13 11 32 32 H 1.08002 * 119.62295 * 179.69595 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0344 -0.0005 6 6 5.7322 -0.0989 -0.0005 7 1 6.1351 0.8160 0.4339 8 6 6.2364 -0.2463 -1.4375 9 8 6.1608 -1.2220 0.7723 10 6 7.4293 -1.0420 1.4051 11 6 7.7805 -2.2808 2.1880 12 1 7.1028 -3.1218 2.2006 13 6 8.9667 -2.3408 2.8881 14 7 9.7920 -1.3171 2.8723 15 14 9.4015 -3.8762 3.8591 16 1 10.1550 -4.8150 2.9894 17 1 10.2394 -3.5027 5.0268 18 1 8.1561 -4.5317 4.3328 19 6 3.4766 -1.1948 -0.0059 20 7 2.1586 -1.1463 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5137 24 1 1.6508 2.1373 0.0006 25 1 4.1366 2.1138 -0.0001 26 1 5.8335 -1.1613 -1.8718 27 1 5.9095 0.6103 -2.0269 28 1 7.3254 -0.2935 -1.4374 29 1 8.1916 -0.8636 0.6467 30 1 7.3808 -0.1871 2.0796 31 1 10.6265 -1.3591 3.3651 32 1 3.9753 -2.1528 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205609817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:35 Heat of formation + Delta-G solvation = -48.380866 kcal Electronic energy + Delta-G solvation = -14412.528133 eV Core-core repulsion = 11950.795410 eV Total energy + Delta-G solvation = -2461.732723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31489 -38.89624 -35.31654 -34.34619 -33.21853 -31.56630 -29.25368 -28.14842 -24.88591 -24.79825 -23.47251 -21.93209 -18.78097 -17.98685 -17.40104 -16.81050 -16.42715 -16.03774 -15.92533 -15.32955 -14.95036 -14.33264 -14.05907 -13.83072 -13.60677 -13.19801 -13.16177 -13.00329 -12.92898 -12.72733 -12.45984 -12.28700 -11.89740 -11.29963 -10.96954 -10.73069 -10.39007 -10.24013 -9.70793 -8.33562 -6.45528 0.13954 0.33192 1.39131 1.41447 1.53517 2.33116 2.77716 3.00486 3.06065 3.39261 3.84701 3.89199 4.02802 4.14970 4.31031 4.33146 4.53120 4.66516 4.76687 4.80302 4.83677 4.87286 4.96908 5.10523 5.16681 5.20398 5.28010 5.37076 5.54690 5.81190 5.95131 6.51253 6.79561 7.05714 7.26338 8.78528 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042831 B = 0.005785 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.581456 B = 4838.967940 C = 5180.916255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.103 3.897 3 C -0.165 4.165 4 C -0.069 4.069 5 C -0.146 4.146 6 C 0.119 3.881 7 H 0.064 0.936 8 C -0.157 4.157 9 O -0.400 6.400 10 C 0.212 3.788 11 C -0.550 4.550 12 H 0.059 0.941 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.980 3.020 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.267 1.267 19 C 0.109 3.891 20 N -0.514 5.514 21 H 0.091 0.909 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.174 0.826 25 H 0.160 0.840 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.051 0.949 29 H -0.007 1.007 30 H -0.014 1.014 31 H 0.271 0.729 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.260 6.859 -6.892 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.035 4.035 3 C -0.185 4.185 4 C -0.095 4.095 5 C -0.148 4.148 6 C 0.061 3.939 7 H 0.082 0.918 8 C -0.214 4.214 9 O -0.320 6.320 10 C 0.138 3.862 11 C -0.588 4.588 12 H 0.077 0.923 13 C -0.189 4.189 14 N -0.568 5.568 15 Si 0.803 3.197 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.192 1.192 19 C -0.047 4.047 20 N -0.224 5.224 21 H 0.109 0.891 22 H 0.087 0.913 23 H 0.119 0.881 24 H 0.192 0.808 25 H 0.177 0.823 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.003 0.997 31 H 0.080 0.920 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.680 5.975 -6.809 17.250 hybrid contribution 1.451 0.216 0.495 1.548 sum -13.229 6.191 -6.313 15.912 Atomic orbital electron populations 1.20787 0.86340 1.04303 1.04075 1.22051 0.98845 0.88392 0.94172 1.22280 0.94075 1.00301 1.01806 1.21762 0.95313 0.97439 0.94941 1.20849 0.95627 0.95401 1.02955 1.20856 0.90011 0.90245 0.92826 0.91841 1.22165 1.01112 1.03058 0.95079 1.87856 1.38573 1.39200 1.66410 1.19853 0.79931 0.96053 0.90409 1.21386 1.05035 1.01554 1.30791 0.92250 1.25896 0.95261 1.00532 0.97207 1.70052 1.11390 1.32279 1.43044 0.85228 0.78403 0.78113 0.77956 1.19191 1.19812 1.19165 1.22456 0.89117 0.98653 0.94503 1.67584 1.09653 1.31126 1.14061 0.89087 0.91323 0.88126 0.80847 0.82289 0.92366 0.89354 0.92942 0.98960 0.99672 0.92000 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.17 71.23 0.72 -0.91 16 2 C 0.10 2.64 6.78 42.55 0.29 2.93 16 3 C -0.17 -3.59 9.74 22.36 0.22 -3.37 16 4 C -0.07 -1.76 9.84 22.47 0.22 -1.54 16 5 C -0.15 -4.90 5.02 -19.77 -0.10 -5.00 16 6 C 0.12 4.50 2.95 29.85 0.09 4.59 16 7 H 0.06 2.34 7.71 -2.39 -0.02 2.32 16 8 C -0.16 -5.07 9.51 71.98 0.68 -4.38 16 9 O -0.40 -19.69 9.15 -148.98 -1.36 -21.05 16 10 C 0.21 11.93 5.50 71.24 0.39 12.32 16 11 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 12 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 13 C 0.01 0.57 5.46 84.66 0.46 1.03 16 14 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 15 Si 0.98 44.77 29.54 68.60 2.03 46.79 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.11 3.93 10.52 84.67 0.89 4.82 16 20 N -0.51 -17.12 10.27 -183.89 -1.89 -19.01 16 21 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 22 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.10 1.10 8.08 -2.38 -0.02 1.08 16 24 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 25 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 26 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.81 7.87 -2.39 -0.02 1.79 16 29 H -0.01 -0.43 7.87 -2.39 -0.02 -0.44 16 30 H -0.01 -0.85 8.09 -2.38 -0.02 -0.87 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.14 5.48 7.65 -2.91 -0.02 5.46 16 Total: -1.00 -69.63 280.55 4.26 -65.37 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.09 Total: 5.68 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.11 Total: -22.35 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.60 Total: -74.44 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.36 Total: -21.05 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.63 4.26 -65.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.992 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds