Wall clock time and date at job start Sun Mar 29 2020 21:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 119.61689 * 2 1 4 4 C 1.38622 * 119.15969 * 179.70136 * 3 2 1 5 5 C 1.38670 * 118.42238 * 0.51462 * 4 3 2 6 6 C 1.50706 * 120.42123 * 179.78320 * 5 4 3 7 7 H 1.08998 * 109.46456 * 339.71400 * 6 5 4 8 8 C 1.52997 * 109.47238 * 99.71566 * 6 5 4 9 9 O 1.42895 * 109.46938 * 219.71991 * 6 5 4 10 10 C 1.42901 * 114.00054 * 149.99840 * 9 6 5 11 11 C 1.50692 * 109.47528 * 179.97438 * 10 9 6 12 12 H 1.08001 * 120.00165 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00451 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99562 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00372 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47165 * 89.99548 * 15 13 11 17 17 H 1.48500 * 109.47214 * 209.99972 * 15 13 11 18 18 H 1.48503 * 109.46808 * 329.99997 * 15 13 11 19 19 C 1.38182 * 119.16240 * 359.50492 * 5 4 3 20 20 N 1.31846 * 119.62085 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46819 * 270.01984 * 1 2 3 22 22 H 1.08995 * 109.47147 * 30.02618 * 1 2 3 23 23 H 1.09004 * 109.46844 * 150.02748 * 1 2 3 24 24 H 1.07997 * 120.41847 * 359.94959 * 3 2 1 25 25 H 1.08003 * 120.79153 * 180.26924 * 4 3 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.46832 * 60.00314 * 8 6 5 28 28 H 1.09004 * 109.47261 * 300.00295 * 8 6 5 29 29 H 1.09005 * 109.47237 * 299.99876 * 10 9 6 30 30 H 1.09004 * 109.47007 * 59.99598 * 10 9 6 31 31 H 0.97003 * 119.99694 * 180.02562 * 14 13 11 32 32 H 1.07995 * 119.61697 * 180.25717 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1907 0.0063 5 6 4.2266 -0.0341 0.0015 6 6 5.7323 -0.0986 0.0031 7 1 6.1369 0.8505 -0.3483 8 6 6.2296 -0.3703 1.4242 9 8 6.1649 -1.1503 -0.8622 10 6 7.4363 -0.9163 -1.4710 11 6 7.7916 -2.0825 -2.3568 12 1 7.1140 -2.9187 -2.4463 13 6 8.9817 -2.0821 -3.0530 14 7 9.8071 -1.0640 -2.9437 15 14 9.4217 -3.5274 -4.1516 16 1 8.9062 -3.2821 -5.5225 17 1 10.8978 -3.6825 -4.1980 18 1 8.8106 -4.7667 -3.6074 19 6 3.4767 -1.1947 0.0010 20 7 2.1587 -1.1462 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8903 -0.5134 24 1 1.6508 2.1373 -0.0008 25 1 4.1366 2.1140 0.0108 26 1 7.3187 -0.4165 1.4254 27 1 5.8249 -1.3194 1.7755 28 1 5.8996 0.4320 2.0842 29 1 7.3908 -0.0060 -2.0690 30 1 8.1950 -0.8045 -0.6964 31 1 10.6442 -1.0636 -3.4338 32 1 3.9755 -2.1525 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:40 Heat of formation + Delta-G solvation = -28.430926 kcal Electronic energy + Delta-G solvation = -14409.449737 eV Core-core repulsion = 11948.582108 eV Total energy + Delta-G solvation = -2460.867629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13791 -37.20696 -33.62546 -32.53362 -32.11837 -30.26271 -27.23743 -26.95831 -23.68023 -22.97590 -21.98379 -20.62119 -16.79292 -16.54946 -15.99732 -15.20276 -15.00426 -14.50647 -14.22092 -13.99935 -13.66456 -12.98150 -12.61159 -12.46972 -12.22572 -12.13485 -12.00692 -11.46955 -11.30891 -10.86418 -10.79480 -10.56005 -10.09817 -9.63143 -9.21439 -9.13129 -8.93047 -8.55431 -8.21070 -6.13560 -4.15297 1.29086 1.46285 3.29626 3.34719 3.40117 3.94236 4.31396 4.45576 4.66018 4.85537 5.10128 5.23195 5.24206 5.31061 5.52523 5.54602 5.62605 5.63163 5.72145 5.91067 5.99404 6.09982 6.20823 6.35637 6.45928 6.61088 6.92707 7.05875 7.38731 7.76870 8.10630 8.20748 8.51333 8.97408 9.49664 10.97880 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042725 B = 0.005771 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.197410 B = 4850.672149 C = 5171.493037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.113 3.887 3 C -0.177 4.177 4 C -0.070 4.070 5 C -0.127 4.127 6 C 0.127 3.873 7 H 0.062 0.938 8 C -0.165 4.165 9 O -0.385 6.385 10 C 0.196 3.804 11 C -0.515 4.515 12 H 0.067 0.933 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.908 3.092 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.132 3.868 20 N -0.489 5.489 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.264 0.736 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.964 5.294 7.190 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.096 4.096 5 C -0.129 4.129 6 C 0.067 3.933 7 H 0.080 0.920 8 C -0.222 4.222 9 O -0.304 6.304 10 C 0.122 3.878 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.025 4.025 20 N -0.199 5.199 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.026 0.974 31 H 0.074 0.926 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.371 4.409 7.091 15.764 hybrid contribution 1.150 0.471 -0.600 1.380 sum -12.221 4.880 6.491 14.673 Atomic orbital electron populations 1.20662 0.89260 1.03174 1.02663 1.21268 0.96850 0.88670 0.95712 1.21824 0.94640 0.99039 1.04201 1.21429 0.94309 0.97760 0.96101 1.20984 0.97059 0.94192 1.00666 1.20581 0.88351 0.92919 0.91416 0.92043 1.22241 1.02174 1.01729 0.96104 1.87907 1.39977 1.41290 1.61274 1.20272 0.78686 0.97110 0.91741 1.21049 1.03948 1.04387 1.25975 0.91484 1.24938 0.95806 0.96732 0.96928 1.69960 1.10834 1.30453 1.42528 0.86338 0.77415 0.82228 0.80546 1.20459 1.21058 1.19564 1.22677 0.88332 0.98954 0.92556 1.67576 1.10142 1.29181 1.12955 0.90785 0.91039 0.90649 0.85169 0.84991 0.91584 0.92033 0.92695 0.97680 0.97439 0.92631 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.01 0.37 -0.63 16 2 C 0.11 1.56 6.78 -82.59 -0.56 1.00 16 3 C -0.18 -2.24 9.74 -39.44 -0.38 -2.63 16 4 C -0.07 -0.98 9.82 -39.28 -0.39 -1.37 16 5 C -0.13 -2.13 4.98 -104.48 -0.52 -2.65 16 6 C 0.13 2.34 2.94 -27.88 -0.08 2.26 16 7 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 8 C -0.16 -2.65 9.51 37.16 0.35 -2.30 16 9 O -0.38 -9.06 9.32 -35.23 -0.33 -9.38 16 10 C 0.20 5.28 5.50 36.00 0.20 5.48 16 11 C -0.52 -15.06 9.43 -34.44 -0.32 -15.38 16 12 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 15 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.13 2.29 10.53 -17.55 -0.18 2.10 16 20 N -0.49 -8.13 10.27 -9.47 -0.10 -8.23 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 25 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 26 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.15 8.09 -51.93 -0.42 -0.27 16 30 H 0.01 0.21 7.87 -51.93 -0.41 -0.19 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.16 2.86 7.78 -52.49 -0.41 2.45 16 LS Contribution 280.78 15.07 4.23 4.23 Total: -1.00 -31.53 280.78 -6.65 -38.18 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.55 Total: -3.08 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.62 Total: -12.57 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.64 Total: -34.16 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.33 Total: -9.38 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.53 -6.65 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.745 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds