Wall clock time and date at job start Sun Mar 29 2020 21:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 119.61689 * 2 1 4 4 C 1.38622 * 119.15969 * 179.70136 * 3 2 1 5 5 C 1.38670 * 118.42238 * 0.51462 * 4 3 2 6 6 C 1.50706 * 120.42123 * 179.78320 * 5 4 3 7 7 H 1.08998 * 109.46456 * 339.71400 * 6 5 4 8 8 C 1.52997 * 109.47238 * 99.71566 * 6 5 4 9 9 O 1.42895 * 109.46938 * 219.71991 * 6 5 4 10 10 C 1.42901 * 114.00054 * 149.99840 * 9 6 5 11 11 C 1.50692 * 109.47528 * 179.97438 * 10 9 6 12 12 H 1.08001 * 120.00165 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00451 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99562 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00372 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47165 * 89.99548 * 15 13 11 17 17 H 1.48500 * 109.47214 * 209.99972 * 15 13 11 18 18 H 1.48503 * 109.46808 * 329.99997 * 15 13 11 19 19 C 1.38182 * 119.16240 * 359.50492 * 5 4 3 20 20 N 1.31846 * 119.62085 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.46819 * 270.01984 * 1 2 3 22 22 H 1.08995 * 109.47147 * 30.02618 * 1 2 3 23 23 H 1.09004 * 109.46844 * 150.02748 * 1 2 3 24 24 H 1.07997 * 120.41847 * 359.94959 * 3 2 1 25 25 H 1.08003 * 120.79153 * 180.26924 * 4 3 2 26 26 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.46832 * 60.00314 * 8 6 5 28 28 H 1.09004 * 109.47261 * 300.00295 * 8 6 5 29 29 H 1.09005 * 109.47237 * 299.99876 * 10 9 6 30 30 H 1.09004 * 109.47007 * 59.99598 * 10 9 6 31 31 H 0.97003 * 119.99694 * 180.02562 * 14 13 11 32 32 H 1.07995 * 119.61697 * 180.25717 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1907 0.0063 5 6 4.2266 -0.0341 0.0015 6 6 5.7323 -0.0986 0.0031 7 1 6.1369 0.8505 -0.3483 8 6 6.2296 -0.3703 1.4242 9 8 6.1649 -1.1503 -0.8622 10 6 7.4363 -0.9163 -1.4710 11 6 7.7916 -2.0825 -2.3568 12 1 7.1140 -2.9187 -2.4463 13 6 8.9817 -2.0821 -3.0530 14 7 9.8071 -1.0640 -2.9437 15 14 9.4217 -3.5274 -4.1516 16 1 8.9062 -3.2821 -5.5225 17 1 10.8978 -3.6825 -4.1980 18 1 8.8106 -4.7667 -3.6074 19 6 3.4767 -1.1947 0.0010 20 7 2.1587 -1.1462 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8903 -0.5134 24 1 1.6508 2.1373 -0.0008 25 1 4.1366 2.1140 0.0108 26 1 7.3187 -0.4165 1.4254 27 1 5.8249 -1.3194 1.7755 28 1 5.8996 0.4320 2.0842 29 1 7.3908 -0.0060 -2.0690 30 1 8.1950 -0.8045 -0.6964 31 1 10.6442 -1.0636 -3.4338 32 1 3.9755 -2.1525 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205609818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:40 Heat of formation + Delta-G solvation = -48.373907 kcal Electronic energy + Delta-G solvation = -14410.314529 eV Core-core repulsion = 11948.582108 eV Total energy + Delta-G solvation = -2461.732421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31788 -38.89533 -35.31607 -34.34472 -33.22251 -31.57559 -29.25147 -28.13384 -24.92619 -24.79098 -23.45608 -21.93916 -18.77884 -17.98355 -17.40416 -16.81637 -16.44565 -16.02695 -15.92608 -15.32827 -14.94797 -14.33244 -14.06328 -13.81655 -13.61674 -13.19818 -13.16238 -13.00805 -12.94573 -12.70333 -12.46265 -12.28696 -11.89610 -11.30073 -10.96383 -10.73618 -10.39055 -10.24134 -9.71825 -8.33593 -6.45566 0.13438 0.32889 1.39122 1.41399 1.53559 2.33144 2.76870 3.00425 3.07829 3.39296 3.84067 3.88874 4.02586 4.13890 4.30042 4.33877 4.53064 4.66491 4.76262 4.80186 4.83709 4.87061 4.96762 5.10377 5.16590 5.20259 5.27694 5.37170 5.54661 5.80766 5.95135 6.51268 6.79638 7.05172 7.26267 8.78480 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042725 B = 0.005771 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.197410 B = 4850.672149 C = 5171.493037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.104 3.896 3 C -0.166 4.166 4 C -0.069 4.069 5 C -0.146 4.146 6 C 0.119 3.881 7 H 0.063 0.937 8 C -0.157 4.157 9 O -0.400 6.400 10 C 0.212 3.788 11 C -0.550 4.550 12 H 0.059 0.941 13 C 0.010 3.990 14 N -0.928 5.928 15 Si 0.980 3.020 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.266 1.266 19 C 0.110 3.890 20 N -0.514 5.514 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.174 0.826 25 H 0.158 0.842 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.087 0.913 29 H -0.014 1.014 30 H -0.007 1.007 31 H 0.271 0.729 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 6.211 7.121 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.034 4.034 3 C -0.185 4.185 4 C -0.095 4.095 5 C -0.148 4.148 6 C 0.061 3.939 7 H 0.081 0.919 8 C -0.215 4.215 9 O -0.320 6.320 10 C 0.137 3.863 11 C -0.588 4.588 12 H 0.077 0.923 13 C -0.189 4.189 14 N -0.568 5.568 15 Si 0.803 3.197 16 H -0.194 1.194 17 H -0.197 1.197 18 H -0.190 1.190 19 C -0.046 4.046 20 N -0.224 5.224 21 H 0.109 0.891 22 H 0.118 0.882 23 H 0.087 0.913 24 H 0.191 0.809 25 H 0.176 0.824 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.003 0.997 30 H 0.010 0.990 31 H 0.080 0.920 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.747 5.332 7.039 17.189 hybrid contribution 1.450 0.283 -0.522 1.567 sum -13.297 5.615 6.517 15.837 Atomic orbital electron populations 1.20788 0.86321 1.04308 1.04087 1.22047 0.98848 0.88374 0.94119 1.22281 0.94063 1.00326 1.01832 1.21775 0.95341 0.97466 0.94899 1.20843 0.95625 0.95397 1.02977 1.20858 0.89973 0.91500 0.91596 0.91879 1.22171 1.01149 1.02885 0.95259 1.87863 1.38281 1.43601 1.62291 1.19854 0.79870 0.95630 0.90900 1.21385 1.04785 1.05071 1.27530 0.92261 1.25901 0.95259 0.99730 0.98014 1.70057 1.11277 1.32268 1.43160 0.85228 0.77641 0.78376 0.78455 1.19411 1.19727 1.19013 1.22461 0.89132 0.98599 0.94431 1.67574 1.09647 1.31098 1.14066 0.89064 0.88155 0.91291 0.80888 0.82408 0.92941 0.92283 0.89452 0.99666 0.98962 0.92000 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.17 71.24 0.72 -0.90 16 2 C 0.10 2.65 6.78 42.56 0.29 2.94 16 3 C -0.17 -3.63 9.74 22.36 0.22 -3.41 16 4 C -0.07 -1.79 9.82 22.46 0.22 -1.57 16 5 C -0.15 -4.90 4.98 -19.77 -0.10 -5.00 16 6 C 0.12 4.51 2.94 29.85 0.09 4.60 16 7 H 0.06 2.32 7.68 -2.39 -0.02 2.31 16 8 C -0.16 -5.10 9.51 71.98 0.68 -4.41 16 9 O -0.40 -19.71 9.32 -148.98 -1.39 -21.09 16 10 C 0.21 11.93 5.50 71.23 0.39 12.32 16 11 C -0.55 -33.08 9.43 25.60 0.24 -32.84 16 12 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 13 C 0.01 0.56 5.46 84.66 0.46 1.02 16 14 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 15 Si 0.98 44.75 29.54 68.60 2.03 46.77 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.11 3.93 10.53 84.67 0.89 4.82 16 20 N -0.51 -16.98 10.27 -183.89 -1.89 -18.87 16 21 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 23 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 25 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 26 H 0.05 1.81 7.87 -2.39 -0.02 1.79 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 29 H -0.01 -0.84 8.09 -2.38 -0.02 -0.86 16 30 H -0.01 -0.43 7.87 -2.38 -0.02 -0.45 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.14 5.41 7.78 -2.91 -0.02 5.38 16 Total: -1.00 -69.54 280.78 4.23 -65.31 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.09 Total: 5.72 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 4.11 Total: -22.43 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.60 Total: -74.28 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.39 Total: -21.09 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.54 4.23 -65.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.938 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds