Wall clock time and date at job start Sun Mar 29 2020 22:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47118 * 2 1 4 4 O 1.42900 * 109.46915 * 120.00169 * 2 1 3 5 5 C 1.42900 * 113.99913 * 269.99803 * 4 2 1 6 6 C 1.53004 * 109.47078 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46824 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00636 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99684 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00362 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 120.00058 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46941 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47110 * 120.00089 * 11 9 7 14 14 H 1.48502 * 109.46998 * 240.00067 * 11 9 7 15 15 C 1.50699 * 109.47056 * 239.99856 * 2 1 3 16 16 C 1.38647 * 120.78723 * 99.99946 * 15 2 1 17 17 C 1.38209 * 119.16168 * 179.74448 * 16 15 2 18 18 N 1.31875 * 120.76041 * 0.25720 * 17 16 15 19 19 C 1.31861 * 121.73030 * 0.02562 * 18 17 16 20 20 C 1.38204 * 120.76410 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.46752 * 59.99641 * 1 2 3 22 22 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46640 * 300.00061 * 1 2 3 24 24 H 1.08998 * 109.47314 * 300.00056 * 5 4 2 25 25 H 1.09002 * 109.47027 * 60.00245 * 5 4 2 26 26 H 1.08998 * 109.47410 * 300.00383 * 6 5 4 27 27 H 1.09002 * 109.46676 * 60.00416 * 6 5 4 28 28 H 0.96998 * 120.00502 * 180.02562 * 10 9 7 29 29 H 1.08002 * 120.42293 * 0.02952 * 16 15 2 30 30 H 1.07995 * 119.61831 * 180.23405 * 17 16 15 31 31 H 1.07997 * 119.61902 * 180.02562 * 19 18 17 32 32 H 1.08005 * 120.42170 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6409 3.4792 7 6 2.9128 0.2625 4.6678 8 1 2.7016 1.3185 4.5863 9 6 3.3699 -0.2591 5.8594 10 7 3.6276 -1.5449 5.9587 11 14 3.6233 0.8606 7.3331 12 1 3.2634 2.2533 6.9642 13 1 2.7605 0.4072 8.4534 14 1 5.0468 0.8113 7.7533 15 6 2.0324 -0.7104 -1.2304 16 6 2.4639 0.0053 -2.3367 17 6 2.9230 -0.6805 -3.4454 18 7 2.9484 -1.9989 -3.4601 19 6 2.5407 -2.7120 -2.4286 20 6 2.0686 -2.0954 -1.2853 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 2.9320 0.9512 2.0451 25 1 1.2538 0.6546 2.5588 26 1 1.9757 -1.4091 3.7281 27 1 3.6541 -1.1130 3.2147 28 1 3.9489 -1.9120 6.7971 29 1 2.4459 1.0851 -2.3305 30 1 3.2645 -0.1303 -4.3097 31 1 2.5769 -3.7902 -2.4774 32 1 1.7364 -2.6849 -0.4435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:47 Heat of formation + Delta-G solvation = -47.563132 kcal Electronic energy + Delta-G solvation = -14274.411095 eV Core-core repulsion = 11812.713832 eV Total energy + Delta-G solvation = -2461.697263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19313 -39.13691 -35.64064 -34.46195 -32.15134 -31.87253 -30.64723 -26.80949 -25.28757 -24.38003 -22.83806 -22.18170 -18.78079 -17.89539 -17.68679 -16.60079 -16.53911 -16.43438 -16.31142 -15.36690 -14.82821 -14.52699 -14.34101 -14.16812 -13.99218 -13.18433 -13.01647 -12.90674 -12.62348 -12.43062 -12.32689 -11.90377 -11.48892 -11.34852 -10.80601 -10.59409 -10.52996 -10.26701 -10.06739 -8.24645 -6.37873 0.20670 0.25371 1.41147 1.41935 1.55408 2.36348 2.72741 2.92993 3.09668 3.58847 3.65105 3.92495 4.09245 4.22467 4.26044 4.29638 4.43236 4.45697 4.68542 4.71612 4.81020 4.90929 4.91782 5.08751 5.21182 5.31504 5.41822 5.56935 5.72760 5.77928 6.10423 6.40662 6.78654 7.01457 7.32380 8.88641 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050681 B = 0.005034 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.344319 B = 5560.981785 C = 5747.417311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 H 0.083 0.917 4 O -0.402 6.402 5 C 0.087 3.913 6 C 0.028 3.972 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.974 3.026 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.278 1.278 15 C -0.050 4.050 16 C -0.164 4.164 17 C 0.091 3.909 18 N -0.510 5.510 19 C 0.088 3.912 20 C -0.161 4.161 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.050 0.950 26 H -0.005 1.005 27 H -0.009 1.009 28 H 0.266 0.734 29 H 0.162 0.838 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 4.673 -15.796 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.101 0.899 4 O -0.322 6.322 5 C 0.011 3.989 6 C -0.009 4.009 7 C -0.583 4.583 8 H 0.087 0.913 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.798 3.202 12 H -0.181 1.181 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.059 4.059 16 C -0.183 4.183 17 C -0.066 4.066 18 N -0.220 5.220 19 C -0.068 4.068 20 C -0.181 4.181 21 H 0.106 0.894 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.013 0.987 27 H 0.009 0.991 28 H 0.074 0.926 29 H 0.180 0.820 30 H 0.204 0.796 31 H 0.191 0.809 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.320 3.917 -16.420 17.425 hybrid contribution -0.115 0.597 1.809 1.909 sum -4.435 4.513 -14.611 15.922 Atomic orbital electron populations 1.22209 0.93487 1.02932 1.03321 1.21073 0.94926 0.95488 0.82901 0.89858 1.87938 1.86776 1.36898 1.20609 1.22523 0.98739 0.92588 0.85066 1.18932 0.94774 0.95379 0.91845 1.21510 1.44995 0.95311 0.96448 0.91284 1.26042 0.94685 0.96676 1.02385 1.70132 1.45895 1.13892 1.27342 0.85268 0.77884 0.79042 0.78043 1.18083 1.20256 1.20350 1.20415 0.95889 0.94498 0.95063 1.22280 0.99848 1.02722 0.93492 1.23250 0.95030 0.89895 0.98386 1.67703 1.15683 1.09189 1.29391 1.23050 0.94013 1.01364 0.88355 1.22116 1.00914 0.95406 0.99681 0.89354 0.92474 0.91788 0.93612 0.93149 0.98702 0.99084 0.92567 0.82008 0.79625 0.80941 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.51 71.98 0.68 -3.23 16 2 C 0.11 3.25 2.96 29.85 0.09 3.34 16 3 H 0.08 2.11 7.69 -2.39 -0.02 2.09 16 4 O -0.40 -15.77 9.41 -148.98 -1.40 -17.17 16 5 C 0.09 3.69 5.69 71.98 0.41 4.10 16 6 C 0.03 1.53 5.34 29.85 0.16 1.69 16 7 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.00 0.02 5.46 84.65 0.46 0.48 16 10 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 11 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 C -0.05 -1.36 5.00 -19.67 -0.10 -1.45 16 16 C -0.16 -3.48 9.78 22.36 0.22 -3.26 16 17 C 0.09 1.91 11.18 84.68 0.95 2.86 16 18 N -0.51 -13.08 10.36 -195.85 -2.03 -15.11 16 19 C 0.09 2.23 11.18 84.68 0.95 3.18 16 20 C -0.16 -4.52 9.46 22.36 0.21 -4.31 16 21 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16 24 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 25 H 0.05 2.00 7.87 -2.39 -0.02 1.98 16 26 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.13 3.83 7.87 -2.91 -0.02 3.80 16 Total: -1.00 -68.36 280.76 4.22 -64.13 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.08 Total: 6.85 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.26 Total: -27.36 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.74 Total: -72.15 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -1.40 Total: -17.17 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.36 4.22 -64.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.571 kcal (2) G-P(sol) polarization free energy of solvation -68.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds