Wall clock time and date at job start Sun Mar 29 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46744 * 90.00434 * 12 10 8 14 14 H 1.48500 * 109.47304 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.47341 * 330.00626 * 12 10 8 16 16 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 17 17 C 1.38314 * 125.74622 * 114.69614 * 16 2 1 18 18 C 1.47152 * 108.14490 * 179.85477 * 17 16 2 19 19 C 1.35499 * 107.60001 * 0.40948 * 18 17 16 20 20 C 1.38316 * 125.74986 * 295.00350 * 16 2 1 21 21 H 1.07997 * 125.92799 * 0.02562 * 20 16 2 22 22 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 24 24 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 26 26 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 27 27 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 29 29 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 30 30 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 31 31 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 32 32 H 1.08005 * 125.92906 * 359.97438 * 17 16 2 33 33 H 1.08000 * 126.19886 * 180.17052 * 18 17 16 34 34 H 1.08003 * 126.19530 * 179.76414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7091 -0.6405 3.4789 7 6 2.9160 0.2764 4.6860 8 6 3.4167 -0.5347 5.8531 9 1 3.5723 -1.5980 5.7447 10 6 3.6773 0.0806 7.0591 11 7 3.4883 1.3754 7.1911 12 14 4.2973 -0.9251 8.5061 13 1 5.7818 -0.9587 8.4856 14 1 3.8338 -0.3063 9.7739 15 1 3.7695 -2.3097 8.4090 16 6 2.0324 -0.7105 -1.2304 17 6 2.7439 -0.1300 -2.2647 18 6 3.0392 -1.1731 -3.2598 19 6 2.4993 -2.3320 -2.8110 20 6 1.8544 -2.0516 -1.5185 21 1 1.3324 -2.7683 -0.9019 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.9320 0.9514 2.0450 26 1 1.2538 0.6547 2.5589 27 1 1.9776 -1.4092 3.7281 28 1 3.6555 -1.1119 3.2139 29 1 3.6473 1.0454 4.4370 30 1 1.9694 0.7475 4.9509 31 1 3.6713 1.8082 8.0397 32 1 3.0343 0.9083 -2.3298 33 1 3.5839 -1.0384 -4.1826 34 1 2.5358 -3.2885 -3.3114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:10 Heat of formation + Delta-G solvation = -52.599658 kcal Electronic energy + Delta-G solvation = -14134.907551 eV Core-core repulsion = 11724.762059 eV Total energy + Delta-G solvation = -2410.145492 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.128 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -36.46575 -34.65060 -32.82959 -30.73242 -29.03499 -25.49759 -24.77846 -23.64990 -21.87271 -20.13440 -19.00650 -16.17659 -15.43795 -15.31591 -14.08837 -13.74069 -13.61390 -13.45767 -11.92644 -11.74780 -11.25386 -10.95447 -10.76193 -10.33039 -10.08504 -9.88504 -9.79878 -9.15845 -9.02088 -8.87286 -8.79064 -8.54393 -8.51668 -8.40170 -8.16959 -8.13694 -7.53478 -7.32143 -5.20257 -4.66424 -3.93067 -3.19192 3.98652 4.01490 4.10148 5.19719 5.65974 6.04711 6.14353 6.33390 7.01752 7.08706 7.23986 7.31958 7.40392 7.52290 7.55644 7.91030 7.98735 8.05723 8.13865 8.18209 8.24227 8.26827 8.47460 8.58153 8.71012 8.81778 8.87625 9.28781 9.38224 9.51935 9.72534 9.88779 10.10411 10.41333 10.68634 10.73702 11.92008 Molecular weight = 221.13amu Principal moments of inertia in cm(-1) A = 0.052609 B = 0.004332 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.105112 B = 6462.034204 C = 6659.459640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.035 0.965 4 O -0.379 6.379 5 C 0.062 3.938 6 C -0.106 4.106 7 C 0.021 3.979 8 C -0.505 4.505 9 H 0.057 0.943 10 C 0.050 3.950 11 N -0.901 5.901 12 Si 0.892 3.108 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.274 1.274 16 C -0.158 4.158 17 C -0.310 4.310 18 C -0.248 4.248 19 C -0.254 4.254 20 C -0.280 4.280 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.256 0.744 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 0.441 2.888 4.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.103 3.897 3 H 0.053 0.947 4 O -0.299 6.299 5 C -0.015 4.015 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.543 4.543 9 H 0.075 0.925 10 C -0.149 4.149 11 N -0.542 5.542 12 Si 0.721 3.279 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.199 1.199 16 C -0.158 4.158 17 C -0.328 4.328 18 C -0.266 4.266 19 C -0.272 4.272 20 C -0.299 4.299 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.761 0.382 3.021 4.110 hybrid contribution 0.350 -0.135 0.799 0.883 sum -2.411 0.247 3.820 4.524 Atomic orbital electron populations 1.22161 0.98062 1.01550 0.99432 1.20264 0.91242 0.93631 0.84580 0.94724 1.88041 1.86584 1.35484 1.19743 1.22587 0.97770 0.93637 0.87519 1.21584 1.00164 0.98973 0.93694 1.19072 0.96877 0.94661 0.90972 1.21382 1.42266 0.94876 0.95824 0.92512 1.25040 0.96244 0.94898 0.98693 1.70017 1.50314 1.09016 1.24862 0.86576 0.78927 0.80455 0.81978 1.20857 1.21582 1.19869 1.18602 1.07974 0.95225 0.93997 1.21637 1.16574 0.94437 1.00174 1.21246 1.11330 0.95140 0.98889 1.21326 1.11829 0.94670 0.99388 1.21639 1.15163 0.94358 0.98701 0.91383 0.92564 0.94491 0.92833 0.94849 0.95133 0.93032 0.92766 0.96490 0.96586 0.93473 0.91740 0.91587 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.45 37.16 0.35 -4.82 16 2 C 0.16 6.03 3.14 -27.88 -0.09 5.95 16 3 H 0.03 1.28 7.76 -51.93 -0.40 0.87 16 4 O -0.38 -14.71 9.93 -35.23 -0.35 -15.06 16 5 C 0.06 2.23 5.75 37.16 0.21 2.44 16 6 C -0.11 -3.92 5.52 -26.74 -0.15 -4.06 16 7 C 0.02 0.83 4.97 -27.89 -0.14 0.69 16 8 C -0.50 -20.01 9.11 -34.44 -0.31 -20.32 16 9 H 0.06 2.21 7.74 -52.48 -0.41 1.80 16 10 C 0.05 1.94 5.46 -17.82 -0.10 1.84 16 11 N -0.90 -35.60 13.29 55.43 0.74 -34.86 16 12 Si 0.89 29.22 29.54 -169.99 -5.02 24.20 16 13 H -0.28 -9.06 7.11 56.52 0.40 -8.66 16 14 H -0.29 -9.19 7.11 56.52 0.40 -8.79 16 15 H -0.27 -8.83 7.11 56.52 0.40 -8.43 16 16 C -0.16 -6.55 5.09 -104.57 -0.53 -7.08 16 17 C -0.31 -12.91 11.08 -35.94 -0.40 -13.31 16 18 C -0.25 -10.17 11.11 -36.94 -0.41 -10.58 16 19 C -0.25 -10.48 11.11 -36.94 -0.41 -10.89 16 20 C -0.28 -11.83 10.92 -35.94 -0.39 -12.23 16 21 H 0.07 2.81 8.06 -52.49 -0.42 2.38 16 22 H 0.06 1.89 8.10 -51.93 -0.42 1.47 16 23 H 0.04 1.13 7.87 -51.93 -0.41 0.72 16 24 H 0.05 1.69 8.14 -51.93 -0.42 1.27 16 25 H 0.03 1.19 8.09 -51.93 -0.42 0.77 16 26 H 0.03 1.05 7.87 -51.93 -0.41 0.64 16 27 H 0.05 1.87 8.14 -51.93 -0.42 1.44 16 28 H 0.05 2.01 8.14 -51.93 -0.42 1.59 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 9.46 8.31 -40.82 -0.34 9.12 16 32 H 0.06 2.55 8.06 -52.48 -0.42 2.13 16 33 H 0.07 2.50 8.06 -52.49 -0.42 2.08 16 34 H 0.07 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -2.00 -82.76 295.47 -7.95 -90.71 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.41 Total: 2.95 kcal Atomic # 6 Polarization: -70.02 SS G_CDS: -2.36 Total: -72.39 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.74 Total: -34.86 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.35 Total: -15.06 kcal Atomic # 14 Polarization: 29.22 SS G_CDS: -5.02 Total: 24.20 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -82.76 -7.95 -90.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.112 kcal (2) G-P(sol) polarization free energy of solvation -82.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds