Wall clock time and date at job start Sun Mar 29 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 5 5 C 1.42898 * 114.00186 * 269.99829 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99989 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00117 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46744 * 90.00434 * 12 10 8 14 14 H 1.48500 * 109.47304 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.47341 * 330.00626 * 12 10 8 16 16 C 1.50700 * 109.47191 * 239.99679 * 2 1 3 17 17 C 1.38314 * 125.74622 * 114.69614 * 16 2 1 18 18 C 1.47152 * 108.14490 * 179.85477 * 17 16 2 19 19 C 1.35499 * 107.60001 * 0.40948 * 18 17 16 20 20 C 1.38316 * 125.74986 * 295.00350 * 16 2 1 21 21 H 1.07997 * 125.92799 * 0.02562 * 20 16 2 22 22 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 24 24 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 26 26 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 27 27 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 29 29 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 30 30 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 31 31 H 0.96996 * 119.99885 * 179.97438 * 11 10 8 32 32 H 1.08005 * 125.92906 * 359.97438 * 17 16 2 33 33 H 1.08000 * 126.19886 * 180.17052 * 18 17 16 34 34 H 1.08003 * 126.19530 * 179.76414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7091 -0.6405 3.4789 7 6 2.9160 0.2764 4.6860 8 6 3.4167 -0.5347 5.8531 9 1 3.5723 -1.5980 5.7447 10 6 3.6773 0.0806 7.0591 11 7 3.4883 1.3754 7.1911 12 14 4.2973 -0.9251 8.5061 13 1 5.7818 -0.9587 8.4856 14 1 3.8338 -0.3063 9.7739 15 1 3.7695 -2.3097 8.4090 16 6 2.0324 -0.7105 -1.2304 17 6 2.7439 -0.1300 -2.2647 18 6 3.0392 -1.1731 -3.2598 19 6 2.4993 -2.3320 -2.8110 20 6 1.8544 -2.0516 -1.5185 21 1 1.3324 -2.7683 -0.9019 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.9320 0.9514 2.0450 26 1 1.2538 0.6547 2.5589 27 1 1.9776 -1.4092 3.7281 28 1 3.6555 -1.1119 3.2139 29 1 3.6473 1.0454 4.4370 30 1 1.9694 0.7475 4.9509 31 1 3.6713 1.8082 8.0397 32 1 3.0343 0.9083 -2.3298 33 1 3.5839 -1.0384 -4.1826 34 1 2.5358 -3.2885 -3.3114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:10 Heat of formation + Delta-G solvation = -117.208947 kcal Electronic energy + Delta-G solvation = -14137.709220 eV Core-core repulsion = 11724.762059 eV Total energy + Delta-G solvation = -2412.947161 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48748 -37.79007 -35.85145 -33.72285 -31.97710 -28.48912 -27.84367 -26.87425 -24.88166 -23.09124 -22.02380 -19.34129 -18.49590 -18.45951 -17.10496 -16.68652 -16.55354 -16.37032 -14.89879 -14.66795 -14.13710 -13.75519 -13.64628 -13.09665 -12.83583 -12.66584 -12.46512 -12.19434 -12.14696 -11.93538 -11.92140 -11.71495 -11.57313 -11.46252 -11.20936 -11.13223 -10.52573 -10.27644 -8.16039 -7.88975 -7.20486 -6.28546 1.40353 1.46873 1.58610 2.45032 2.55590 2.80281 3.14922 3.29449 4.15738 4.17519 4.42182 4.53134 4.55584 4.62207 4.77876 4.92926 4.98159 5.04994 5.08299 5.14328 5.21912 5.27278 5.35800 5.45330 5.50547 5.70791 5.84034 6.17560 6.25591 6.41313 6.57417 6.84033 6.90746 7.39052 7.49136 7.52143 8.97499 Molecular weight = 221.13amu Principal moments of inertia in cm(-1) A = 0.052609 B = 0.004332 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.105112 B = 6462.034204 C = 6659.459640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.153 3.847 3 H 0.041 0.959 4 O -0.402 6.402 5 C 0.068 3.932 6 C -0.094 4.094 7 C 0.032 3.968 8 C -0.550 4.550 9 H 0.056 0.944 10 C -0.004 4.004 11 N -0.934 5.934 12 Si 0.981 3.019 13 H -0.269 1.269 14 H -0.270 1.270 15 H -0.266 1.266 16 C -0.171 4.171 17 C -0.339 4.339 18 C -0.259 4.259 19 C -0.268 4.268 20 C -0.314 4.314 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.043 0.957 29 H -0.006 1.006 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 0.202 4.167 5.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.097 3.903 3 H 0.059 0.941 4 O -0.323 6.323 5 C -0.009 4.009 6 C -0.132 4.132 7 C -0.005 4.005 8 C -0.588 4.588 9 H 0.074 0.926 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.804 3.196 13 H -0.194 1.194 14 H -0.195 1.195 15 H -0.190 1.190 16 C -0.171 4.171 17 C -0.358 4.358 18 C -0.277 4.277 19 C -0.286 4.286 20 C -0.333 4.333 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.013 0.987 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.742 0.154 4.281 5.087 hybrid contribution 0.363 -0.005 0.370 0.518 sum -2.380 0.149 4.651 5.226 Atomic orbital electron populations 1.22035 0.94760 1.01731 1.01636 1.20398 0.93840 0.93151 0.82952 0.94067 1.87992 1.87092 1.36640 1.20535 1.22558 0.98781 0.93101 0.86416 1.21413 0.99723 0.98648 0.93369 1.18910 0.95377 0.94330 0.91901 1.21627 1.44906 0.95118 0.97139 0.92563 1.26135 0.95390 0.96396 1.02153 1.70138 1.49756 1.10991 1.26512 0.85227 0.78658 0.78507 0.77241 1.19428 1.19456 1.19021 1.19114 1.07343 0.95320 0.95306 1.22049 1.17293 0.95506 1.00905 1.21678 1.11223 0.94928 0.99904 1.21733 1.11491 0.96070 0.99296 1.21922 1.16582 0.95072 0.99714 0.91597 0.93395 0.91683 0.91228 0.94761 0.93097 0.92790 0.93768 0.98717 0.98037 0.92448 0.90432 0.88766 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -9.20 9.45 71.98 0.68 -8.52 16 2 C 0.15 11.23 3.14 29.85 0.09 11.32 16 3 H 0.04 2.93 7.76 -2.39 -0.02 2.91 16 4 O -0.40 -30.52 9.93 -148.98 -1.48 -32.00 16 5 C 0.07 4.77 5.75 71.98 0.41 5.19 16 6 C -0.09 -6.82 5.52 30.59 0.17 -6.65 16 7 C 0.03 2.47 4.97 29.84 0.15 2.62 16 8 C -0.55 -43.15 9.11 25.60 0.23 -42.92 16 9 H 0.06 4.32 7.74 -2.91 -0.02 4.30 16 10 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 11 N -0.93 -72.39 13.29 21.45 0.28 -72.11 16 12 Si 0.98 59.21 29.54 68.60 2.03 61.24 16 13 H -0.27 -15.65 7.11 99.48 0.71 -14.95 16 14 H -0.27 -15.35 7.11 99.48 0.71 -14.65 16 15 H -0.27 -15.65 7.11 99.48 0.71 -14.94 16 16 C -0.17 -13.88 5.09 -19.83 -0.10 -13.98 16 17 C -0.34 -27.61 11.08 24.63 0.27 -27.33 16 18 C -0.26 -20.64 11.11 23.98 0.27 -20.37 16 19 C -0.27 -21.53 11.11 23.98 0.27 -21.26 16 20 C -0.31 -26.14 10.92 24.63 0.27 -25.87 16 21 H 0.07 5.38 8.06 -2.91 -0.02 5.36 16 22 H 0.05 3.09 8.10 -2.39 -0.02 3.07 16 23 H 0.06 3.74 7.87 -2.39 -0.02 3.73 16 24 H 0.07 4.17 8.14 -2.39 -0.02 4.15 16 25 H 0.03 2.39 8.09 -2.39 -0.02 2.37 16 26 H 0.05 3.37 7.87 -2.39 -0.02 3.35 16 27 H 0.05 3.85 8.14 -2.39 -0.02 3.83 16 28 H 0.04 3.25 8.14 -2.39 -0.02 3.23 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.27 19.16 8.31 -92.71 -0.77 18.39 16 32 H 0.08 5.98 8.06 -2.91 -0.02 5.95 16 33 H 0.09 6.83 8.06 -2.91 -0.02 6.81 16 34 H 0.09 6.70 8.06 -2.91 -0.02 6.68 16 Total: -2.00 -166.31 295.47 5.05 -161.26 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 1.04 Total: 29.21 kcal Atomic # 6 Polarization: -150.77 SS G_CDS: 3.17 Total: -147.59 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: 0.28 Total: -72.11 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.48 Total: -32.00 kcal Atomic # 14 Polarization: 59.21 SS G_CDS: 2.03 Total: 61.24 kcal Total: -166.31 5.05 -161.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.051 kcal (2) G-P(sol) polarization free energy of solvation -166.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -161.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds