Wall clock time and date at job start Sun Mar 29 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.47407 * 2 1 4 4 O 1.42901 * 109.47145 * 239.99997 * 2 1 3 5 5 C 1.42895 * 113.99948 * 90.00219 * 4 2 1 6 6 C 1.53006 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46672 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46691 * 119.99941 * 12 10 8 15 15 H 1.48497 * 109.47025 * 240.00323 * 12 10 8 16 16 C 1.50699 * 109.47179 * 119.99820 * 2 1 3 17 17 C 1.38313 * 125.74971 * 244.69302 * 16 2 1 18 18 C 1.47155 * 108.14469 * 179.85232 * 17 16 2 19 19 C 1.35500 * 107.60073 * 0.41350 * 18 17 16 20 20 C 1.38318 * 125.74650 * 65.00130 * 16 2 1 21 21 H 1.07991 * 125.92929 * 0.02562 * 20 16 2 22 22 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47321 * 300.00299 * 1 2 3 24 24 H 1.09004 * 109.47291 * 59.99969 * 1 2 3 25 25 H 1.09001 * 109.47626 * 60.00343 * 5 4 2 26 26 H 1.09001 * 109.47255 * 300.00084 * 5 4 2 27 27 H 1.09001 * 109.47002 * 299.99477 * 6 5 4 28 28 H 1.08993 * 109.46955 * 59.99914 * 6 5 4 29 29 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 30 30 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 31 31 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 32 32 H 1.08002 * 125.92668 * 359.97438 * 17 16 2 33 33 H 1.07998 * 126.19694 * 180.17308 * 18 17 16 34 34 H 1.08001 * 126.19679 * 179.75830 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7079 -0.6409 -3.4792 7 6 2.9148 0.2761 -4.6863 8 6 3.4155 -0.5351 -5.8534 9 1 3.5703 -1.5985 -5.7451 10 6 3.6751 0.0800 -7.0598 11 7 3.4861 1.3748 -7.1918 12 14 4.2951 -0.9257 -8.5067 13 1 4.4228 -2.3488 -8.1018 14 1 3.3340 -0.8164 -9.6335 15 1 5.6208 -0.4115 -8.9350 16 6 2.0323 -0.7104 1.2305 17 6 2.7540 -0.1325 2.2591 18 6 3.0392 -1.1730 3.2598 19 6 2.4992 -2.3319 2.8111 20 6 1.8544 -2.0515 1.5185 21 1 1.3331 -2.7684 0.9017 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 2.9320 0.9513 -2.0450 26 1 1.2538 0.6547 -2.5588 27 1 3.6541 -1.1129 -3.2147 28 1 1.9757 -1.4089 -3.7281 29 1 1.9684 0.7479 -4.9507 30 1 3.6468 1.0446 -4.4377 31 1 3.6690 1.8076 -8.0404 32 1 3.0544 0.9033 2.3186 33 1 3.5837 -1.0382 4.1827 34 1 2.5356 -3.2883 3.3115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:15 Heat of formation + Delta-G solvation = -52.638881 kcal Electronic energy + Delta-G solvation = -14135.301046 eV Core-core repulsion = 11725.153853 eV Total energy + Delta-G solvation = -2410.147193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -36.46578 -34.64980 -32.82999 -30.73255 -29.03507 -25.49848 -24.78000 -23.64994 -21.87319 -20.13300 -19.00733 -16.17606 -15.44129 -15.31696 -14.08973 -13.74011 -13.61092 -13.45635 -11.92834 -11.75215 -11.25580 -10.95375 -10.76095 -10.33519 -10.10197 -9.86380 -9.79498 -9.15395 -9.02479 -8.87318 -8.78734 -8.54642 -8.51645 -8.40222 -8.16747 -8.12995 -7.53984 -7.32056 -5.20483 -4.66547 -3.93027 -3.19301 3.97290 4.01260 4.11942 5.19726 5.65830 6.04670 6.14207 6.33662 7.01675 7.08727 7.23966 7.31922 7.40335 7.52254 7.55625 7.91013 7.98731 8.05700 8.13877 8.18226 8.24238 8.26797 8.47533 8.58362 8.71056 8.81684 8.87450 9.28757 9.38207 9.52070 9.72519 9.88913 10.10375 10.41250 10.68617 10.73699 11.91812 Molecular weight = 221.13amu Principal moments of inertia in cm(-1) A = 0.052591 B = 0.004333 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.284299 B = 6460.998584 C = 6658.109915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.035 0.965 4 O -0.379 6.379 5 C 0.062 3.938 6 C -0.106 4.106 7 C 0.021 3.979 8 C -0.504 4.504 9 H 0.057 0.943 10 C 0.050 3.950 11 N -0.901 5.901 12 Si 0.892 3.108 13 H -0.272 1.272 14 H -0.287 1.287 15 H -0.286 1.286 16 C -0.158 4.158 17 C -0.310 4.310 18 C -0.248 4.248 19 C -0.254 4.254 20 C -0.280 4.280 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.255 0.745 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 0.428 -2.867 4.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.103 3.897 3 H 0.053 0.947 4 O -0.299 6.299 5 C -0.015 4.015 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.543 4.543 9 H 0.075 0.925 10 C -0.149 4.149 11 N -0.542 5.542 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.214 1.214 15 H -0.213 1.213 16 C -0.158 4.158 17 C -0.328 4.328 18 C -0.266 4.266 19 C -0.272 4.272 20 C -0.299 4.299 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.751 0.364 -2.995 4.083 hybrid contribution 0.337 -0.123 -0.810 0.886 sum -2.414 0.241 -3.805 4.513 Atomic orbital electron populations 1.22158 0.98057 1.01549 0.99432 1.20266 0.91248 0.93632 0.84573 0.94727 1.88042 1.86582 1.35487 1.19744 1.22588 0.97770 0.93638 0.87521 1.21585 1.00170 0.98967 0.93687 1.19079 0.96877 0.94672 0.90994 1.21423 1.42161 0.94905 0.95772 0.92450 1.25046 0.96261 0.94897 0.98710 1.70027 1.50419 1.09008 1.24741 0.86520 0.78110 0.80700 0.82654 1.19656 1.21352 1.21292 1.18607 1.07848 0.95268 0.94093 1.21639 1.16307 0.94644 1.00206 1.21246 1.11387 0.95210 0.98775 1.21326 1.11892 0.94643 0.99348 1.21640 1.15164 0.94306 0.98744 0.91380 0.92565 0.92833 0.94492 0.94845 0.95143 0.92762 0.93033 0.96586 0.96480 0.93529 0.91737 0.91588 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.45 37.15 0.35 -4.82 16 2 C 0.16 6.03 3.14 -27.89 -0.09 5.94 16 3 H 0.03 1.27 7.76 -51.92 -0.40 0.87 16 4 O -0.38 -14.71 9.93 -35.23 -0.35 -15.06 16 5 C 0.06 2.22 5.75 37.16 0.21 2.44 16 6 C -0.11 -3.92 5.52 -26.73 -0.15 -4.06 16 7 C 0.02 0.81 4.97 -27.89 -0.14 0.67 16 8 C -0.50 -19.97 9.11 -34.44 -0.31 -20.28 16 9 H 0.06 2.24 7.74 -52.49 -0.41 1.83 16 10 C 0.05 1.92 5.46 -17.82 -0.10 1.82 16 11 N -0.90 -35.58 13.29 55.43 0.74 -34.85 16 12 Si 0.89 29.21 29.54 -169.99 -5.02 24.18 16 13 H -0.27 -8.80 7.11 56.52 0.40 -8.40 16 14 H -0.29 -9.14 7.11 56.52 0.40 -8.73 16 15 H -0.29 -9.16 7.11 56.52 0.40 -8.76 16 16 C -0.16 -6.56 5.09 -104.57 -0.53 -7.09 16 17 C -0.31 -12.90 11.08 -35.94 -0.40 -13.30 16 18 C -0.25 -10.18 11.11 -36.94 -0.41 -10.59 16 19 C -0.25 -10.47 11.11 -36.94 -0.41 -10.89 16 20 C -0.28 -11.83 10.92 -35.94 -0.39 -12.22 16 21 H 0.07 2.81 8.06 -52.49 -0.42 2.38 16 22 H 0.06 1.89 8.10 -51.93 -0.42 1.47 16 23 H 0.05 1.69 8.14 -51.93 -0.42 1.27 16 24 H 0.04 1.13 7.87 -51.93 -0.41 0.72 16 25 H 0.03 1.19 8.09 -51.93 -0.42 0.77 16 26 H 0.03 1.05 7.87 -51.93 -0.41 0.64 16 27 H 0.05 2.01 8.14 -51.93 -0.42 1.59 16 28 H 0.05 1.87 8.14 -51.93 -0.42 1.44 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.26 9.42 8.31 -40.82 -0.34 9.08 16 32 H 0.06 2.55 8.06 -52.49 -0.42 2.13 16 33 H 0.07 2.50 8.06 -52.49 -0.42 2.07 16 34 H 0.07 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -2.00 -82.77 295.47 -7.95 -90.73 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.41 Total: 2.92 kcal Atomic # 6 Polarization: -70.01 SS G_CDS: -2.36 Total: -72.37 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.74 Total: -34.85 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.35 Total: -15.06 kcal Atomic # 14 Polarization: 29.21 SS G_CDS: -5.02 Total: 24.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -82.77 -7.95 -90.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.088 kcal (2) G-P(sol) polarization free energy of solvation -82.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds