Wall clock time and date at job start Sun Mar 29 2020 22:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.47407 * 2 1 4 4 O 1.42901 * 109.47145 * 239.99997 * 2 1 3 5 5 C 1.42895 * 113.99948 * 90.00219 * 4 2 1 6 6 C 1.53006 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46672 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46691 * 119.99941 * 12 10 8 15 15 H 1.48497 * 109.47025 * 240.00323 * 12 10 8 16 16 C 1.50699 * 109.47179 * 119.99820 * 2 1 3 17 17 C 1.38313 * 125.74971 * 244.69302 * 16 2 1 18 18 C 1.47155 * 108.14469 * 179.85232 * 17 16 2 19 19 C 1.35500 * 107.60073 * 0.41350 * 18 17 16 20 20 C 1.38318 * 125.74650 * 65.00130 * 16 2 1 21 21 H 1.07991 * 125.92929 * 0.02562 * 20 16 2 22 22 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47321 * 300.00299 * 1 2 3 24 24 H 1.09004 * 109.47291 * 59.99969 * 1 2 3 25 25 H 1.09001 * 109.47626 * 60.00343 * 5 4 2 26 26 H 1.09001 * 109.47255 * 300.00084 * 5 4 2 27 27 H 1.09001 * 109.47002 * 299.99477 * 6 5 4 28 28 H 1.08993 * 109.46955 * 59.99914 * 6 5 4 29 29 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 30 30 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 31 31 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 32 32 H 1.08002 * 125.92668 * 359.97438 * 17 16 2 33 33 H 1.07998 * 126.19694 * 180.17308 * 18 17 16 34 34 H 1.08001 * 126.19679 * 179.75830 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2940 6 6 2.7079 -0.6409 -3.4792 7 6 2.9148 0.2761 -4.6863 8 6 3.4155 -0.5351 -5.8534 9 1 3.5703 -1.5985 -5.7451 10 6 3.6751 0.0800 -7.0598 11 7 3.4861 1.3748 -7.1918 12 14 4.2951 -0.9257 -8.5067 13 1 4.4228 -2.3488 -8.1018 14 1 3.3340 -0.8164 -9.6335 15 1 5.6208 -0.4115 -8.9350 16 6 2.0323 -0.7104 1.2305 17 6 2.7540 -0.1325 2.2591 18 6 3.0392 -1.1730 3.2598 19 6 2.4992 -2.3319 2.8111 20 6 1.8544 -2.0515 1.5185 21 1 1.3331 -2.7684 0.9017 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 2.9320 0.9513 -2.0450 26 1 1.2538 0.6547 -2.5588 27 1 3.6541 -1.1129 -3.2147 28 1 1.9757 -1.4089 -3.7281 29 1 1.9684 0.7479 -4.9507 30 1 3.6468 1.0446 -4.4377 31 1 3.6690 1.8076 -8.0404 32 1 3.0544 0.9033 2.3186 33 1 3.5837 -1.0382 4.1827 34 1 2.5356 -3.2883 3.3115 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:14 Heat of formation + Delta-G solvation = -117.262799 kcal Electronic energy + Delta-G solvation = -14138.103349 eV Core-core repulsion = 11725.153853 eV Total energy + Delta-G solvation = -2412.949496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48753 -37.78935 -35.85180 -33.72298 -31.97692 -28.48994 -27.84534 -26.87434 -24.88198 -23.08968 -22.02456 -19.34078 -18.49940 -18.46081 -17.10619 -16.68782 -16.55260 -16.36677 -14.90042 -14.67108 -14.14031 -13.75445 -13.64462 -13.09496 -12.83738 -12.67139 -12.46747 -12.19040 -12.15100 -11.92586 -11.92441 -11.71492 -11.57615 -11.46220 -11.20839 -11.12390 -10.52882 -10.27539 -8.16250 -7.89109 -7.20461 -6.28619 1.40340 1.45166 1.60184 2.45010 2.55432 2.80253 3.14697 3.29721 4.15673 4.17534 4.42183 4.53116 4.55564 4.62170 4.77885 4.92915 4.98180 5.04987 5.08325 5.14327 5.21922 5.27328 5.35779 5.45363 5.50695 5.70741 5.84060 6.17550 6.25591 6.41348 6.57498 6.84150 6.90709 7.39006 7.49124 7.52126 8.97474 Molecular weight = 221.13amu Principal moments of inertia in cm(-1) A = 0.052591 B = 0.004333 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.284299 B = 6460.998584 C = 6658.109915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.153 3.847 3 H 0.041 0.959 4 O -0.402 6.402 5 C 0.068 3.932 6 C -0.094 4.094 7 C 0.032 3.968 8 C -0.549 4.549 9 H 0.056 0.944 10 C -0.004 4.004 11 N -0.934 5.934 12 Si 0.981 3.019 13 H -0.267 1.267 14 H -0.268 1.268 15 H -0.270 1.270 16 C -0.171 4.171 17 C -0.339 4.339 18 C -0.259 4.259 19 C -0.268 4.268 20 C -0.314 4.314 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.001 0.999 30 H -0.005 1.005 31 H 0.267 0.733 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 0.210 -4.164 5.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.097 3.903 3 H 0.059 0.941 4 O -0.323 6.323 5 C -0.009 4.009 6 C -0.132 4.132 7 C -0.005 4.005 8 C -0.587 4.587 9 H 0.074 0.926 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.804 3.196 13 H -0.191 1.191 14 H -0.193 1.193 15 H -0.196 1.196 16 C -0.171 4.171 17 C -0.357 4.357 18 C -0.277 4.277 19 C -0.286 4.286 20 C -0.333 4.333 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.020 0.980 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.751 0.159 -4.277 5.088 hybrid contribution 0.355 0.001 -0.376 0.518 sum -2.396 0.160 -4.653 5.236 Atomic orbital electron populations 1.22032 0.94753 1.01732 1.01638 1.20401 0.93849 0.93151 0.82945 0.94071 1.87992 1.87092 1.36644 1.20537 1.22559 0.98783 0.93100 0.86415 1.21415 0.99722 0.98647 0.93368 1.18916 0.95379 0.94337 0.91913 1.21654 1.44836 0.95099 0.97101 0.92586 1.26138 0.95406 0.96396 1.02161 1.70143 1.49847 1.10974 1.26432 0.85173 0.78186 0.78517 0.77725 1.19148 1.19271 1.19553 1.19119 1.07217 0.95359 0.95396 1.22052 1.17037 0.95710 1.00950 1.21676 1.11274 0.94991 0.99786 1.21734 1.11552 0.96042 0.99255 1.21922 1.16582 0.95019 0.99757 0.91594 0.93393 0.91223 0.91684 0.94758 0.93102 0.93786 0.92784 0.98028 0.98707 0.92453 0.90443 0.88766 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -9.20 9.45 71.98 0.68 -8.52 16 2 C 0.15 11.22 3.14 29.85 0.09 11.32 16 3 H 0.04 2.93 7.76 -2.38 -0.02 2.91 16 4 O -0.40 -30.53 9.93 -148.98 -1.48 -32.01 16 5 C 0.07 4.77 5.75 71.98 0.41 5.19 16 6 C -0.09 -6.82 5.52 30.60 0.17 -6.65 16 7 C 0.03 2.45 4.97 29.85 0.15 2.60 16 8 C -0.55 -43.08 9.11 25.60 0.23 -42.85 16 9 H 0.06 4.32 7.74 -2.91 -0.02 4.29 16 10 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 11 N -0.93 -72.35 13.29 21.45 0.28 -72.07 16 12 Si 0.98 59.23 29.54 68.60 2.03 61.26 16 13 H -0.27 -15.85 7.11 99.48 0.71 -15.14 16 14 H -0.27 -15.30 7.11 99.48 0.71 -14.59 16 15 H -0.27 -15.59 7.11 99.48 0.71 -14.88 16 16 C -0.17 -13.89 5.09 -19.83 -0.10 -13.99 16 17 C -0.34 -27.61 11.08 24.63 0.27 -27.34 16 18 C -0.26 -20.63 11.11 23.98 0.27 -20.37 16 19 C -0.27 -21.52 11.11 23.98 0.27 -21.26 16 20 C -0.31 -26.13 10.92 24.63 0.27 -25.86 16 21 H 0.07 5.39 8.06 -2.92 -0.02 5.36 16 22 H 0.05 3.09 8.10 -2.39 -0.02 3.07 16 23 H 0.07 4.17 8.14 -2.39 -0.02 4.15 16 24 H 0.06 3.74 7.87 -2.39 -0.02 3.72 16 25 H 0.03 2.39 8.09 -2.39 -0.02 2.37 16 26 H 0.05 3.37 7.87 -2.39 -0.02 3.35 16 27 H 0.04 3.23 8.14 -2.39 -0.02 3.22 16 28 H 0.05 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 31 H 0.27 19.11 8.31 -92.71 -0.77 18.34 16 32 H 0.08 5.97 8.06 -2.91 -0.02 5.95 16 33 H 0.09 6.83 8.06 -2.91 -0.02 6.81 16 34 H 0.09 6.70 8.06 -2.91 -0.02 6.68 16 Total: -2.00 -166.35 295.47 5.05 -161.30 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 1.04 Total: 29.08 kcal Atomic # 6 Polarization: -150.73 SS G_CDS: 3.17 Total: -147.56 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: 0.28 Total: -72.07 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.48 Total: -32.01 kcal Atomic # 14 Polarization: 59.23 SS G_CDS: 2.03 Total: 61.26 kcal Total: -166.35 5.05 -161.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.035 kcal (2) G-P(sol) polarization free energy of solvation -166.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -161.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds