Wall clock time and date at job start Sun Mar 29 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47464 * 2 1 4 4 N 1.31810 * 119.12165 * 269.97815 * 3 2 1 5 5 C 1.32319 * 120.82186 * 179.72519 * 4 3 2 6 6 C 1.38623 * 119.09964 * 0.56789 * 5 4 3 7 7 C 1.38581 * 118.39724 * 359.44791 * 6 5 4 8 8 C 1.50700 * 120.44439 * 180.29767 * 7 6 5 9 9 N 1.46500 * 109.47287 * 94.99739 * 8 7 6 10 10 C 1.46504 * 119.99870 * 270.00055 * 9 8 7 11 11 C 1.36934 * 120.00139 * 89.99531 * 9 8 7 12 12 H 1.08002 * 119.99967 * 20.37782 * 11 9 8 13 13 C 1.38811 * 120.00042 * 200.37287 * 11 9 8 14 14 N 1.31617 * 120.00320 * 14.98478 * 13 11 9 15 15 Si 1.86807 * 119.99970 * 194.98328 * 13 11 9 16 16 H 1.48488 * 109.47272 * 85.00339 * 15 13 11 17 17 H 1.48508 * 109.46911 * 205.00818 * 15 13 11 18 18 H 1.48503 * 109.46903 * 324.99974 * 15 13 11 19 19 N 1.31780 * 119.12852 * 89.99778 * 3 2 1 20 20 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47025 * 300.00824 * 1 2 3 22 22 H 1.09000 * 109.47127 * 59.99971 * 1 2 3 23 23 H 1.08993 * 109.47149 * 239.99287 * 2 1 3 24 24 H 1.09008 * 109.46845 * 119.99823 * 2 1 3 25 25 H 1.08000 * 120.45133 * 180.31295 * 5 4 3 26 26 H 1.08000 * 120.80141 * 179.71217 * 6 5 4 27 27 H 1.09002 * 109.46754 * 214.99278 * 8 7 6 28 28 H 1.08998 * 109.47005 * 334.99328 * 8 7 6 29 29 H 1.08998 * 109.47033 * 95.09307 * 10 9 8 30 30 H 1.08999 * 109.47023 * 215.09211 * 10 9 8 31 31 H 1.09002 * 109.47104 * 335.09034 * 10 9 8 32 32 H 0.97001 * 120.00320 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2467 2.0254 -1.1515 5 6 2.6825 3.2741 -1.1907 6 6 2.9246 3.9414 -0.0001 7 6 2.6876 3.2726 1.1903 8 6 2.9288 3.9563 2.5114 9 7 1.6745 4.5370 2.9969 10 6 1.3127 5.9088 2.6316 11 6 0.8402 3.7976 3.7921 12 1 1.2234 2.9423 4.3288 13 6 -0.4981 4.1473 3.9084 14 7 -1.0361 4.9867 3.0491 15 14 -1.5357 3.4266 5.2845 16 1 -1.3630 4.2418 6.5136 17 1 -2.9653 3.4338 4.8824 18 1 -1.1036 2.0311 5.5513 19 7 2.2462 2.0255 1.1511 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.8512 3.7654 -2.1376 26 1 3.2851 4.9595 -0.0001 27 1 3.2964 3.2288 3.2352 28 1 3.6688 4.7460 2.3821 29 1 0.6622 5.8924 1.7571 30 1 0.7907 6.3809 3.4639 31 1 2.2160 6.4739 2.4019 32 1 -1.9714 5.2308 3.1301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207088891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:33 Heat of formation + Delta-G solvation = 62.974683 kcal Electronic energy + Delta-G solvation = -15046.988679 eV Core-core repulsion = 12622.377446 eV Total energy + Delta-G solvation = -2424.611233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38320 -35.91656 -33.87712 -33.12608 -31.21953 -30.01811 -26.91458 -25.87598 -24.47689 -23.00820 -21.49327 -20.42478 -17.09012 -16.64360 -15.87552 -14.93472 -14.84702 -14.24491 -13.76739 -13.60538 -13.34872 -13.23746 -12.85447 -11.96084 -11.73846 -11.35205 -11.23912 -10.94656 -10.77366 -10.71211 -10.53958 -10.16625 -10.04838 -10.02445 -9.76844 -8.81117 -8.68296 -8.49119 -6.92187 -5.80606 -3.21491 1.54551 1.76446 3.37527 3.43104 3.45146 4.28827 4.46044 4.52263 4.72409 5.14335 5.40484 5.51548 5.54652 5.58458 5.65895 5.66960 5.81588 6.03760 6.10133 6.20568 6.27477 6.49523 6.55172 6.59939 6.64747 7.08276 7.26927 7.61366 7.72923 7.79422 8.28875 8.82462 9.14427 9.74834 10.21538 11.24414 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.010380 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.988935 B = 2696.828644 C = 3378.921975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.310 3.690 4 N -0.541 5.541 5 C 0.137 3.863 6 C -0.236 4.236 7 C 0.174 3.826 8 C 0.187 3.813 9 N -0.581 5.581 10 C 0.159 3.841 11 C -0.244 4.244 12 H 0.076 0.924 13 C 0.001 3.999 14 N -0.905 5.905 15 Si 0.908 3.092 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.277 1.277 19 N -0.497 5.497 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.156 0.844 26 H 0.135 0.865 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.002 0.998 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -3.601 -5.540 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C 0.042 3.958 4 N -0.257 5.257 5 C -0.028 4.028 6 C -0.259 4.259 7 C 0.024 3.976 8 C 0.058 3.942 9 N -0.301 5.301 10 C 0.015 3.985 11 C -0.373 4.373 12 H 0.094 0.906 13 C -0.198 4.198 14 N -0.550 5.550 15 Si 0.738 3.262 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.203 1.203 19 N -0.212 5.212 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.173 0.827 26 H 0.153 0.847 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.083 -4.408 -5.489 9.304 hybrid contribution -0.607 0.709 0.350 0.997 sum 5.477 -3.699 -5.139 8.371 Atomic orbital electron populations 1.21669 0.93879 1.01712 1.02871 1.20225 0.96645 0.88787 1.03141 1.23119 0.91621 0.97024 0.83997 1.68102 1.15871 1.10953 1.30792 1.22951 0.91540 0.90220 0.98112 1.22643 1.06081 1.02511 0.94651 1.23452 0.87368 0.88644 0.98110 1.20105 0.90313 0.95170 0.88593 1.44320 1.20808 1.10465 1.54494 1.20906 0.94434 0.83020 1.00185 1.19325 0.89577 1.11109 1.17337 0.90604 1.25059 0.96441 0.99613 0.98648 1.70089 1.12440 1.37397 1.35042 0.86197 0.79325 0.78997 0.81656 1.21295 1.21760 1.20259 1.68153 1.12656 1.11039 1.29377 0.92081 0.91704 0.92709 0.90128 0.89667 0.82690 0.84704 0.91448 0.92042 0.95285 0.93121 0.97898 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 37.16 0.37 -1.87 16 2 C -0.05 -0.77 6.37 -27.89 -0.18 -0.95 16 3 C 0.31 6.10 6.90 -157.19 -1.08 5.01 16 4 N -0.54 -10.19 10.33 -10.72 -0.11 -10.30 16 5 C 0.14 2.32 11.31 -17.20 -0.19 2.13 16 6 C -0.24 -4.23 9.84 -39.31 -0.39 -4.62 16 7 C 0.17 3.63 6.41 -82.25 -0.53 3.10 16 8 C 0.19 3.88 6.06 -5.19 -0.03 3.84 16 9 N -0.58 -14.52 2.91 -182.50 -0.53 -15.05 16 10 C 0.16 3.84 9.02 59.85 0.54 4.38 16 11 C -0.24 -6.71 9.68 -15.06 -0.15 -6.86 16 12 H 0.08 2.08 7.86 -52.49 -0.41 1.67 16 13 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 14 N -0.91 -26.51 10.67 55.49 0.59 -25.92 16 15 Si 0.91 22.10 29.58 -169.99 -5.03 17.07 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 N -0.50 -10.85 10.27 -6.99 -0.07 -10.93 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 25 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 26 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 28 H 0.06 1.08 7.78 -51.93 -0.40 0.68 16 29 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 30 H 0.05 1.31 7.21 -51.93 -0.37 0.93 16 31 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 276.87 15.07 4.17 4.17 Total: -1.00 -31.64 276.87 -7.20 -38.84 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.49 Total: -1.99 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.73 Total: 4.11 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.12 Total: -62.20 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.64 -7.20 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207088891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.815 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds