Wall clock time and date at job start Sun Mar 29 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47464 * 2 1 4 4 N 1.31810 * 119.12165 * 269.97815 * 3 2 1 5 5 C 1.32319 * 120.82186 * 179.72519 * 4 3 2 6 6 C 1.38623 * 119.09964 * 0.56789 * 5 4 3 7 7 C 1.38581 * 118.39724 * 359.44791 * 6 5 4 8 8 C 1.50700 * 120.44439 * 180.29767 * 7 6 5 9 9 N 1.46500 * 109.47287 * 94.99739 * 8 7 6 10 10 C 1.46504 * 119.99870 * 270.00055 * 9 8 7 11 11 C 1.36934 * 120.00139 * 89.99531 * 9 8 7 12 12 H 1.08002 * 119.99967 * 20.37782 * 11 9 8 13 13 C 1.38811 * 120.00042 * 200.37287 * 11 9 8 14 14 N 1.31617 * 120.00320 * 14.98478 * 13 11 9 15 15 Si 1.86807 * 119.99970 * 194.98328 * 13 11 9 16 16 H 1.48488 * 109.47272 * 85.00339 * 15 13 11 17 17 H 1.48508 * 109.46911 * 205.00818 * 15 13 11 18 18 H 1.48503 * 109.46903 * 324.99974 * 15 13 11 19 19 N 1.31780 * 119.12852 * 89.99778 * 3 2 1 20 20 H 1.08997 * 109.47314 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47025 * 300.00824 * 1 2 3 22 22 H 1.09000 * 109.47127 * 59.99971 * 1 2 3 23 23 H 1.08993 * 109.47149 * 239.99287 * 2 1 3 24 24 H 1.09008 * 109.46845 * 119.99823 * 2 1 3 25 25 H 1.08000 * 120.45133 * 180.31295 * 5 4 3 26 26 H 1.08000 * 120.80141 * 179.71217 * 6 5 4 27 27 H 1.09002 * 109.46754 * 214.99278 * 8 7 6 28 28 H 1.08998 * 109.47005 * 334.99328 * 8 7 6 29 29 H 1.08998 * 109.47033 * 95.09307 * 10 9 8 30 30 H 1.08999 * 109.47023 * 215.09211 * 10 9 8 31 31 H 1.09002 * 109.47104 * 335.09034 * 10 9 8 32 32 H 0.97001 * 120.00320 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2467 2.0254 -1.1515 5 6 2.6825 3.2741 -1.1907 6 6 2.9246 3.9414 -0.0001 7 6 2.6876 3.2726 1.1903 8 6 2.9288 3.9563 2.5114 9 7 1.6745 4.5370 2.9969 10 6 1.3127 5.9088 2.6316 11 6 0.8402 3.7976 3.7921 12 1 1.2234 2.9423 4.3288 13 6 -0.4981 4.1473 3.9084 14 7 -1.0361 4.9867 3.0491 15 14 -1.5357 3.4266 5.2845 16 1 -1.3630 4.2418 6.5136 17 1 -2.9653 3.4338 4.8824 18 1 -1.1036 2.0311 5.5513 19 7 2.2462 2.0255 1.1511 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.8512 3.7654 -2.1376 26 1 3.2851 4.9595 -0.0001 27 1 3.2964 3.2288 3.2352 28 1 3.6688 4.7460 2.3821 29 1 0.6622 5.8924 1.7571 30 1 0.7907 6.3809 3.4639 31 1 2.2160 6.4739 2.4019 32 1 -1.9714 5.2308 3.1301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207088891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:33 Heat of formation + Delta-G solvation = 42.906800 kcal Electronic energy + Delta-G solvation = -15047.858887 eV Core-core repulsion = 12622.377446 eV Total energy + Delta-G solvation = -2425.481442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85055 -37.72881 -35.29727 -34.70162 -33.09527 -31.50889 -28.61013 -27.87329 -25.84849 -24.65281 -23.07488 -22.02797 -18.86423 -18.36854 -17.37971 -16.77399 -16.25741 -15.86785 -15.43868 -15.17784 -14.90131 -14.83955 -14.42803 -13.60829 -13.24655 -13.04978 -12.85967 -12.65917 -12.57650 -12.36094 -12.06503 -12.01090 -11.94495 -11.56889 -11.40756 -10.70630 -10.23945 -10.07317 -8.91312 -7.88800 -5.33364 0.09596 0.30698 1.43588 1.44411 1.52751 2.47475 2.86078 3.12680 3.24617 3.38377 3.73904 3.83143 4.17032 4.26397 4.32514 4.38244 4.40950 4.61817 4.79471 4.85134 4.87216 4.93172 4.95978 5.17395 5.26759 5.29664 5.58846 5.65594 5.69429 6.23842 6.29422 7.09234 7.34496 7.78306 8.18813 9.14495 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.010380 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.988935 B = 2696.828644 C = 3378.921975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C 0.293 3.707 4 N -0.546 5.546 5 C 0.138 3.862 6 C -0.233 4.233 7 C 0.150 3.850 8 C 0.187 3.813 9 N -0.599 5.599 10 C 0.174 3.826 11 C -0.248 4.248 12 H 0.069 0.931 13 C -0.053 4.053 14 N -0.938 5.938 15 Si 0.965 3.035 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.272 1.272 19 N -0.533 5.533 20 H 0.095 0.905 21 H 0.027 0.973 22 H 0.047 0.953 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.201 0.799 26 H 0.166 0.834 27 H 0.061 0.939 28 H 0.098 0.902 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.045 0.955 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 -3.975 -6.668 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C 0.025 3.975 4 N -0.261 5.261 5 C -0.027 4.027 6 C -0.255 4.255 7 C 0.001 3.999 8 C 0.060 3.940 9 N -0.320 5.320 10 C 0.030 3.970 11 C -0.378 4.378 12 H 0.087 0.913 13 C -0.247 4.247 14 N -0.584 5.584 15 Si 0.793 3.207 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.197 1.197 19 N -0.248 5.248 20 H 0.113 0.887 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.124 0.876 24 H 0.108 0.892 25 H 0.218 0.782 26 H 0.184 0.816 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.017 0.983 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.317 -4.805 -6.619 10.974 hybrid contribution -0.803 0.781 0.578 1.261 sum 6.514 -4.024 -6.040 9.753 Atomic orbital electron populations 1.21613 0.93857 1.03266 1.00638 1.20366 0.96482 0.87231 1.04619 1.23754 0.91604 0.98394 0.83751 1.68215 1.15722 1.11916 1.30278 1.23739 0.89700 0.89563 0.99725 1.22978 1.05058 1.03643 0.93840 1.23452 0.88206 0.89179 0.99021 1.20197 0.89020 0.96127 0.88669 1.44357 1.21204 1.10913 1.55575 1.20649 0.95452 0.83241 0.97677 1.19474 0.90016 1.10533 1.17810 0.91343 1.25724 0.97595 1.00635 1.00782 1.70246 1.12154 1.39336 1.36709 0.85305 0.77399 0.78548 0.79399 1.20593 1.22362 1.19714 1.68127 1.13721 1.12082 1.30891 0.88663 0.95354 0.93334 0.87560 0.89188 0.78217 0.81646 0.92039 0.88381 0.98348 0.95881 0.93611 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.89 71.98 0.71 -3.40 16 2 C -0.05 -1.46 6.37 29.85 0.19 -1.27 16 3 C 0.29 11.16 6.90 138.75 0.96 12.12 16 4 N -0.55 -19.31 10.33 -187.84 -1.94 -21.26 16 5 C 0.14 4.23 11.31 84.71 0.96 5.19 16 6 C -0.23 -7.69 9.84 22.44 0.22 -7.47 16 7 C 0.15 6.06 6.41 42.56 0.27 6.34 16 8 C 0.19 7.53 6.06 85.63 0.52 8.05 16 9 N -0.60 -29.83 2.91 -731.30 -2.13 -31.96 16 10 C 0.17 8.37 9.02 127.77 1.15 9.52 16 11 C -0.25 -13.84 9.68 84.03 0.81 -13.03 16 12 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 13 C -0.05 -3.00 5.06 84.86 0.43 -2.57 16 14 N -0.94 -56.36 10.67 21.65 0.23 -56.13 16 15 Si 0.97 46.31 29.58 68.60 2.03 48.34 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 N -0.53 -23.02 10.27 -176.03 -1.81 -24.83 16 20 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 21 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 26 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.06 2.51 8.03 -2.39 -0.02 2.49 16 28 H 0.10 3.15 7.78 -2.39 -0.02 3.13 16 29 H 0.00 -0.10 7.40 -2.39 -0.02 -0.12 16 30 H 0.02 1.19 7.21 -2.39 -0.02 1.17 16 31 H 0.05 1.75 7.84 -2.39 -0.02 1.73 16 32 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -69.61 276.87 3.70 -65.92 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.09 Total: 6.44 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.22 Total: 13.48 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -5.65 Total: -134.18 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -69.61 3.70 -65.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207088891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.823 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds