Wall clock time and date at job start Sun Mar 29 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31807 * 119.12314 * 2 1 4 4 C 1.32326 * 120.81708 * 180.02562 * 3 2 1 5 5 C 1.38619 * 119.10285 * 359.97438 * 4 3 2 6 6 C 1.38574 * 118.40081 * 0.28010 * 5 4 3 7 7 C 1.50693 * 120.45007 * 179.72235 * 6 5 4 8 8 N 1.46903 * 109.47266 * 94.99684 * 7 6 5 9 9 C 1.46907 * 110.99678 * 293.95809 * 8 7 6 10 10 C 1.46901 * 111.00401 * 170.00500 * 8 7 6 11 11 C 1.50699 * 109.47266 * 190.00111 * 10 8 7 12 12 H 1.07999 * 119.99793 * 359.97438 * 11 10 8 13 13 C 1.37869 * 120.00113 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00469 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99967 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47450 * 90.00121 * 15 13 11 17 17 H 1.48507 * 109.47508 * 209.99854 * 15 13 11 18 18 H 1.48505 * 109.47314 * 329.99982 * 15 13 11 19 19 N 1.31778 * 119.12326 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46887 * 90.00751 * 1 2 3 21 21 H 1.09003 * 109.47534 * 210.00418 * 1 2 3 22 22 H 1.08997 * 109.47627 * 330.00915 * 1 2 3 23 23 H 1.08000 * 120.44464 * 180.02562 * 4 3 2 24 24 H 1.08002 * 120.79619 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.47763 * 214.99921 * 7 6 5 26 26 H 1.08999 * 109.47028 * 335.00241 * 7 6 5 27 27 H 1.08996 * 109.47140 * 59.99918 * 9 8 7 28 28 H 1.09005 * 109.46839 * 179.97438 * 9 8 7 29 29 H 1.08998 * 109.46954 * 299.99460 * 9 8 7 30 30 H 1.08995 * 109.46527 * 309.99830 * 10 8 7 31 31 H 1.09000 * 109.46977 * 69.99839 * 10 8 7 32 32 H 0.96993 * 120.00146 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 3.4712 -1.1904 -0.0059 7 6 4.1960 -2.5116 -0.0125 8 7 4.3263 -3.0055 1.3649 9 6 5.2010 -2.1308 2.1573 10 6 4.8117 -4.3919 1.3834 11 6 4.7003 -4.9445 2.7810 12 1 4.3085 -4.3274 3.5760 13 6 5.0985 -6.2379 3.0447 14 7 5.0018 -6.7201 4.2645 15 14 5.7769 -7.3049 1.6697 16 1 7.2496 -7.1318 1.5893 17 1 5.4604 -8.7293 1.9464 18 1 5.1599 -6.9022 0.3803 19 7 2.1483 -1.1512 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5137 23 1 3.9906 2.1374 -0.0001 24 1 5.2609 -0.0002 -0.0013 25 1 3.6326 -3.2323 -0.6051 26 1 5.1872 -2.3801 -0.4464 27 1 4.7809 -1.1254 2.1848 28 1 5.2797 -2.5192 3.1728 29 1 6.1910 -2.0987 1.7025 30 1 4.2102 -4.9964 0.7047 31 1 5.8539 -4.4162 1.0651 32 1 5.2816 -7.6301 4.4498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207163572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:21 Heat of formation + Delta-G solvation = 53.830777 kcal Electronic energy + Delta-G solvation = -14584.754457 eV Core-core repulsion = 12159.746715 eV Total energy + Delta-G solvation = -2425.007742 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.96853 -36.98948 -33.71250 -33.26487 -32.28296 -28.82177 -28.05667 -27.31778 -24.58275 -23.00652 -21.71747 -20.25025 -17.50920 -16.94132 -16.10562 -15.36526 -15.18759 -14.55439 -14.41494 -14.21505 -13.47237 -13.20465 -12.63545 -12.47087 -12.37342 -12.16589 -11.77133 -11.37021 -11.14087 -10.78055 -10.74130 -10.51036 -10.28718 -9.88384 -9.35155 -9.30413 -9.04509 -8.60057 -7.50482 -6.07102 -4.05041 0.98955 1.19110 3.26368 3.34582 3.36021 3.79056 4.01367 4.17540 4.39814 4.54396 4.91828 5.05825 5.15421 5.25419 5.37365 5.49065 5.54478 5.60350 5.84621 5.95920 5.96434 6.00160 6.13492 6.52219 6.60542 6.76416 6.90999 7.16262 7.52776 7.78392 7.93014 8.25429 8.61121 9.01072 9.53620 11.05984 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045522 B = 0.006183 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.938036 B = 4527.272546 C = 4657.204606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.313 3.687 3 N -0.530 5.530 4 C 0.146 3.854 5 C -0.233 4.233 6 C 0.204 3.796 7 C 0.094 3.906 8 N -0.520 5.520 9 C 0.032 3.968 10 C 0.164 3.836 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.876 3.124 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.499 5.499 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.165 0.835 24 H 0.143 0.857 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.015 0.985 30 H 0.032 0.968 31 H -0.013 1.013 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 13.344 -10.289 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.246 5.246 4 C -0.019 4.019 5 C -0.255 4.255 6 C 0.057 3.943 7 C -0.035 4.035 8 N -0.244 5.244 9 C -0.116 4.116 10 C 0.038 3.962 11 C -0.548 4.548 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.213 5.213 20 H 0.101 0.899 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.182 0.818 24 H 0.161 0.839 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.004 0.996 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.704 13.158 -9.957 16.912 hybrid contribution 2.285 -0.629 -0.942 2.550 sum -1.419 12.529 -10.899 16.667 Atomic orbital electron populations 1.20539 0.85926 1.04182 1.03545 1.23288 0.98188 0.83452 0.90463 1.68213 1.10128 1.30699 1.15545 1.23115 0.89760 0.98345 0.90721 1.22773 1.02803 0.94397 1.05550 1.21750 0.89469 0.95651 0.87455 1.21072 0.97206 0.91588 0.93622 1.61930 1.50947 1.04098 1.07465 1.22344 0.93151 0.95733 1.00380 1.20233 0.92768 0.84008 0.99211 1.20992 1.42223 0.98397 0.93207 0.90120 1.24887 0.95425 0.97588 0.95374 1.69890 1.48158 1.16361 1.19406 0.86858 0.79566 0.80162 0.83135 1.20334 1.21066 1.19121 1.68148 1.09774 1.29999 1.13424 0.89924 0.89400 0.89896 0.81796 0.83899 0.88977 0.93523 0.93676 0.89769 0.96623 0.95012 0.99576 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.32 36.00 0.37 -0.56 16 2 C 0.31 4.70 7.64 -157.20 -1.20 3.50 16 3 N -0.53 -7.57 10.33 -10.72 -0.11 -7.68 16 4 C 0.15 1.79 11.31 -17.20 -0.19 1.60 16 5 C -0.23 -3.06 8.53 -39.32 -0.34 -3.39 16 6 C 0.20 3.31 5.66 -82.25 -0.47 2.84 16 7 C 0.09 1.62 5.33 -4.98 -0.03 1.60 16 8 N -0.52 -11.02 4.74 -245.82 -1.17 -12.18 16 9 C 0.03 0.62 9.04 60.07 0.54 1.16 16 10 C 0.16 3.94 3.79 -4.98 -0.02 3.93 16 11 C -0.51 -14.50 9.01 -34.44 -0.31 -14.81 16 12 H 0.08 2.51 7.37 -52.49 -0.39 2.13 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 15 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 19 N -0.50 -8.55 10.27 -6.99 -0.07 -8.63 16 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 24 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 25 H 0.09 1.61 7.93 -51.93 -0.41 1.19 16 26 H 0.05 0.71 8.04 -51.93 -0.42 0.29 16 27 H 0.04 0.77 6.42 -51.93 -0.33 0.44 16 28 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.03 0.78 6.99 -51.93 -0.36 0.41 16 31 H -0.01 -0.32 7.55 -51.93 -0.39 -0.71 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 271.68 15.07 4.09 4.09 Total: -1.00 -32.42 271.68 -7.24 -39.66 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.36 Total: -2.91 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.74 Total: -2.24 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.58 Total: -55.24 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.42 -7.24 -39.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207163572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.495 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds