Wall clock time and date at job start Sun Mar 29 2020 22:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31807 * 119.12314 * 2 1 4 4 C 1.32326 * 120.81708 * 180.02562 * 3 2 1 5 5 C 1.38619 * 119.10285 * 359.97438 * 4 3 2 6 6 C 1.38574 * 118.40081 * 0.28010 * 5 4 3 7 7 C 1.50693 * 120.45007 * 179.72235 * 6 5 4 8 8 N 1.46903 * 109.47266 * 94.99684 * 7 6 5 9 9 C 1.46907 * 110.99678 * 293.95809 * 8 7 6 10 10 C 1.46901 * 111.00401 * 170.00500 * 8 7 6 11 11 C 1.50699 * 109.47266 * 190.00111 * 10 8 7 12 12 H 1.07999 * 119.99793 * 359.97438 * 11 10 8 13 13 C 1.37869 * 120.00113 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00469 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99967 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47450 * 90.00121 * 15 13 11 17 17 H 1.48507 * 109.47508 * 209.99854 * 15 13 11 18 18 H 1.48505 * 109.47314 * 329.99982 * 15 13 11 19 19 N 1.31778 * 119.12326 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46887 * 90.00751 * 1 2 3 21 21 H 1.09003 * 109.47534 * 210.00418 * 1 2 3 22 22 H 1.08997 * 109.47627 * 330.00915 * 1 2 3 23 23 H 1.08000 * 120.44464 * 180.02562 * 4 3 2 24 24 H 1.08002 * 120.79619 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.47763 * 214.99921 * 7 6 5 26 26 H 1.08999 * 109.47028 * 335.00241 * 7 6 5 27 27 H 1.08996 * 109.47140 * 59.99918 * 9 8 7 28 28 H 1.09005 * 109.46839 * 179.97438 * 9 8 7 29 29 H 1.08998 * 109.46954 * 299.99460 * 9 8 7 30 30 H 1.08995 * 109.46527 * 309.99830 * 10 8 7 31 31 H 1.09000 * 109.46977 * 69.99839 * 10 8 7 32 32 H 0.96993 * 120.00146 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 3.4712 -1.1904 -0.0059 7 6 4.1960 -2.5116 -0.0125 8 7 4.3263 -3.0055 1.3649 9 6 5.2010 -2.1308 2.1573 10 6 4.8117 -4.3919 1.3834 11 6 4.7003 -4.9445 2.7810 12 1 4.3085 -4.3274 3.5760 13 6 5.0985 -6.2379 3.0447 14 7 5.0018 -6.7201 4.2645 15 14 5.7769 -7.3049 1.6697 16 1 7.2496 -7.1318 1.5893 17 1 5.4604 -8.7293 1.9464 18 1 5.1599 -6.9022 0.3803 19 7 2.1483 -1.1512 -0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5137 23 1 3.9906 2.1374 -0.0001 24 1 5.2609 -0.0002 -0.0013 25 1 3.6326 -3.2323 -0.6051 26 1 5.1872 -2.3801 -0.4464 27 1 4.7809 -1.1254 2.1848 28 1 5.2797 -2.5192 3.1728 29 1 6.1910 -2.0987 1.7025 30 1 4.2102 -4.9964 0.7047 31 1 5.8539 -4.4162 1.0651 32 1 5.2816 -7.6301 4.4498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207163572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:21 Heat of formation + Delta-G solvation = 30.102868 kcal Electronic energy + Delta-G solvation = -14585.783376 eV Core-core repulsion = 12159.746715 eV Total energy + Delta-G solvation = -2426.036662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.04357 -38.54056 -35.14712 -34.45859 -34.03954 -30.37668 -29.30049 -28.78716 -26.16240 -24.18663 -23.10437 -21.89735 -19.02965 -18.59637 -17.26930 -16.75863 -16.39464 -16.07863 -15.97111 -15.71646 -14.91009 -14.44669 -14.30610 -13.72514 -13.49271 -13.45682 -13.18316 -13.01525 -12.70755 -12.56816 -12.17160 -11.82898 -11.79012 -11.63805 -11.46364 -10.79352 -10.34060 -10.17281 -9.09899 -8.28435 -6.32778 -0.07515 0.13744 1.35494 1.38524 1.49118 2.35028 2.67736 2.99073 3.04791 3.16863 3.33444 3.63633 3.99161 4.17452 4.28987 4.42213 4.50119 4.55379 4.60287 4.64468 4.72508 4.85563 4.93872 4.99146 5.07521 5.14351 5.50435 5.52803 5.91331 6.10552 6.28041 6.57733 6.72982 7.18124 7.30665 8.88406 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045522 B = 0.006183 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.938036 B = 4527.272546 C = 4657.204606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.297 3.703 3 N -0.540 5.540 4 C 0.150 3.850 5 C -0.225 4.225 6 C 0.178 3.822 7 C 0.098 3.902 8 N -0.546 5.546 9 C 0.041 3.959 10 C 0.174 3.826 11 C -0.519 4.519 12 H 0.033 0.967 13 C 0.007 3.993 14 N -0.949 5.949 15 Si 0.950 3.050 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.247 1.247 19 N -0.535 5.535 20 H 0.100 0.900 21 H 0.081 0.919 22 H 0.096 0.904 23 H 0.207 0.793 24 H 0.172 0.828 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.031 0.969 31 H -0.001 1.001 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 14.605 -12.542 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 N -0.255 5.255 4 C -0.016 4.016 5 C -0.248 4.248 6 C 0.032 3.968 7 C -0.030 4.030 8 N -0.270 5.270 9 C -0.107 4.107 10 C 0.048 3.952 11 C -0.557 4.557 12 H 0.052 0.948 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.773 3.227 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.171 1.171 19 N -0.251 5.251 20 H 0.118 0.882 21 H 0.100 0.900 22 H 0.115 0.885 23 H 0.224 0.776 24 H 0.189 0.811 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.686 14.445 -12.223 19.112 hybrid contribution 1.915 -0.887 -0.180 2.118 sum -0.771 13.558 -12.402 18.391 Atomic orbital electron populations 1.20629 0.84081 1.04503 1.04748 1.23846 0.99554 0.83238 0.90346 1.68314 1.11302 1.30204 1.15701 1.23856 0.89201 0.99823 0.88683 1.23037 1.04158 0.93399 1.04157 1.21721 0.89628 0.96124 0.89324 1.21050 0.98723 0.92177 0.91065 1.61725 1.51691 1.03147 1.10476 1.22222 0.94240 0.95937 0.98306 1.19963 0.93377 0.85868 0.96036 1.21231 1.41649 0.98339 0.94496 0.94845 1.25877 0.95736 0.99185 0.98211 1.70056 1.49773 1.17062 1.22102 0.85672 0.79385 0.77637 0.79984 1.18847 1.20850 1.17054 1.68103 1.10710 1.31415 1.14824 0.88211 0.90035 0.88528 0.77595 0.81058 0.89826 0.90768 0.91733 0.93370 0.94426 0.95095 0.98353 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 10.32 71.23 0.74 -1.01 16 2 C 0.30 8.56 7.64 138.75 1.06 9.62 16 3 N -0.54 -14.16 10.33 -187.84 -1.94 -16.10 16 4 C 0.15 3.16 11.31 84.71 0.96 4.11 16 5 C -0.23 -5.19 8.53 22.44 0.19 -4.99 16 6 C 0.18 5.48 5.66 42.56 0.24 5.72 16 7 C 0.10 3.22 5.33 85.55 0.46 3.68 16 8 N -0.55 -22.81 4.74 -931.65 -4.42 -27.23 16 9 C 0.04 1.54 9.04 127.69 1.15 2.69 16 10 C 0.17 8.29 3.79 85.56 0.32 8.61 16 11 C -0.52 -30.30 9.01 25.60 0.23 -30.07 16 12 H 0.03 2.20 7.37 -2.91 -0.02 2.18 16 13 C 0.01 0.41 5.47 84.65 0.46 0.88 16 14 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 15 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 16 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 19 N -0.53 -17.97 10.27 -176.04 -1.81 -19.77 16 20 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 24 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 25 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 26 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 27 H 0.06 2.12 6.42 -2.39 -0.02 2.11 16 28 H 0.05 2.12 6.76 -2.38 -0.02 2.11 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 1.47 6.99 -2.39 -0.02 1.46 16 31 H 0.00 -0.05 7.55 -2.39 -0.02 -0.07 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -72.24 271.68 0.87 -71.37 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.04 Total: 6.50 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.81 Total: -0.76 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -7.87 Total: -122.57 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -72.24 0.87 -71.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207163572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.468 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds