Wall clock time and date at job start Sun Mar 29 2020 22:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31974 * 119.56937 * 2 1 4 4 C 1.32392 * 121.61961 * 180.02562 * 3 2 1 5 5 N 1.39004 * 119.70418 * 179.97438 * 4 3 2 6 6 C 1.39136 * 120.59250 * 0.02562 * 4 3 2 7 7 C 1.38304 * 119.09493 * 359.74432 * 6 4 3 8 8 C 1.38021 * 119.57331 * 180.02562 * 2 1 3 9 9 C 1.50700 * 120.33218 * 359.95047 * 8 2 1 10 10 N 1.46498 * 109.47706 * 280.32383 * 9 8 2 11 11 C 1.46495 * 119.99837 * 273.56994 * 10 9 8 12 12 C 1.36936 * 120.00171 * 93.83980 * 10 9 8 13 13 H 1.08003 * 119.99767 * 353.92532 * 12 10 9 14 14 C 1.38806 * 120.00115 * 173.92494 * 12 10 9 15 15 N 1.31617 * 120.00044 * 350.92175 * 14 12 10 16 16 Si 1.86802 * 120.00093 * 170.92679 * 14 12 10 17 17 H 1.48498 * 109.47361 * 89.99839 * 16 14 12 18 18 H 1.48495 * 109.46937 * 210.00012 * 16 14 12 19 19 H 1.48497 * 109.46931 * 329.99920 * 16 14 12 20 20 H 1.08995 * 109.47451 * 272.39155 * 1 2 3 21 21 H 1.09007 * 109.47173 * 32.39325 * 1 2 3 22 22 H 1.09004 * 109.46980 * 152.39015 * 1 2 3 23 23 H 0.97003 * 120.00122 * 0.02562 * 5 4 3 24 24 H 0.97003 * 120.00128 * 180.02562 * 5 4 3 25 25 H 1.07997 * 120.45352 * 179.97438 * 6 4 3 26 26 H 1.07998 * 120.75001 * 180.24678 * 7 6 4 27 27 H 1.09002 * 109.46566 * 160.32056 * 9 8 2 28 28 H 1.09002 * 109.47188 * 40.33118 * 9 8 2 29 29 H 1.09001 * 109.47513 * 244.40871 * 11 10 9 30 30 H 1.09006 * 109.47515 * 4.40995 * 11 10 9 31 31 H 1.09001 * 109.47723 * 124.40656 * 11 10 9 32 32 H 0.97002 * 120.00541 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1479 0.0000 4 6 3.4813 1.1952 -0.0005 5 7 4.1265 2.4265 -0.0010 6 6 4.2318 0.0236 -0.0016 7 6 3.5770 -1.1945 0.0033 8 6 2.1882 -1.2004 -0.0005 9 6 1.4325 -2.5043 0.0000 10 7 0.9745 -2.8028 1.3591 11 6 1.8567 -3.5099 2.2906 12 6 -0.2804 -2.4258 1.7571 13 1 -0.8956 -1.8236 1.1048 14 6 -0.7617 -2.8175 2.9987 15 7 -0.0925 -3.6938 3.7174 16 14 -2.3595 -2.1012 3.6495 17 1 -3.4964 -2.9528 3.2167 18 1 -2.3128 -2.0542 5.1329 19 1 -2.5393 -0.7270 3.1161 20 1 -0.3634 0.0429 1.0267 21 1 -0.3634 0.8678 -0.5506 22 1 -0.3633 -0.9107 -0.4763 23 1 3.6075 3.2460 -0.0006 24 1 5.0957 2.4662 -0.0018 25 1 5.3110 0.0649 -0.0024 26 1 4.1330 -2.1204 0.0065 27 1 2.0874 -3.3038 -0.3466 28 1 0.5720 -2.4258 -0.6645 29 1 1.4204 -4.4768 2.5414 30 1 2.8308 -3.6606 1.8252 31 1 1.9756 -2.9185 3.1985 32 1 -0.4286 -3.9673 4.5852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232341423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:10 Heat of formation + Delta-G solvation = 66.759426 kcal Electronic energy + Delta-G solvation = -15154.678426 eV Core-core repulsion = 12730.231312 eV Total energy + Delta-G solvation = -2424.447114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79654 -36.06295 -34.25803 -32.37820 -31.38381 -29.80340 -27.35132 -25.93813 -24.74854 -22.01810 -21.82831 -20.22433 -17.16056 -16.61441 -16.50065 -15.04200 -14.92786 -14.55291 -13.98812 -13.35316 -13.16269 -12.87609 -12.51216 -12.15861 -12.01887 -11.60761 -11.14807 -11.05076 -10.73420 -10.58752 -10.29022 -10.01496 -9.84366 -9.46700 -9.06567 -8.90881 -8.49438 -7.28270 -6.82195 -5.56264 -3.00113 1.82488 2.05112 3.42543 3.48981 3.49930 3.83592 4.40793 4.60200 5.06771 5.39469 5.51860 5.56092 5.68254 5.83803 5.97149 6.06840 6.28310 6.31407 6.38771 6.65158 6.70170 6.80803 6.83498 7.04555 7.20297 7.63883 7.65018 7.78659 7.80102 7.99293 8.44170 8.74995 9.32780 9.96502 10.39892 11.42079 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034460 B = 0.008920 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.347861 B = 3138.257975 C = 3519.741104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.193 3.807 3 N -0.550 5.550 4 C 0.386 3.614 5 N -0.863 5.863 6 C -0.252 4.252 7 C -0.032 4.032 8 C -0.189 4.189 9 C 0.195 3.805 10 N -0.601 5.601 11 C 0.168 3.832 12 C -0.247 4.247 13 H 0.084 0.916 14 C -0.008 4.008 15 N -0.917 5.917 16 Si 0.901 3.099 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.280 1.280 20 H 0.091 0.909 21 H 0.057 0.943 22 H 0.081 0.919 23 H 0.398 0.602 24 H 0.401 0.599 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.056 0.944 30 H -0.009 1.009 31 H 0.026 0.974 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 6.851 -7.804 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.055 3.945 3 N -0.269 5.269 4 C 0.150 3.850 5 N -0.407 5.407 6 C -0.276 4.276 7 C -0.059 4.059 8 C -0.196 4.196 9 C 0.067 3.933 10 N -0.323 5.323 11 C 0.024 3.976 12 C -0.376 4.376 13 H 0.102 0.898 14 C -0.204 4.204 15 N -0.565 5.565 16 Si 0.732 3.268 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.206 1.206 20 H 0.110 0.890 21 H 0.076 0.924 22 H 0.099 0.901 23 H 0.226 0.774 24 H 0.230 0.770 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.009 0.991 31 H 0.045 0.955 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.551 7.460 -7.607 12.507 hybrid contribution 0.064 0.081 0.691 0.698 sum 6.615 7.541 -6.916 12.184 Atomic orbital electron populations 1.20985 0.89043 1.01969 1.03979 1.20700 0.96317 0.86669 0.90794 1.66913 1.07395 1.30769 1.21797 1.18205 0.88681 0.86097 0.92017 1.42053 1.08526 1.04768 1.85395 1.21144 0.99659 0.92303 1.14526 1.21155 0.93999 0.96960 0.93777 1.21685 0.94273 0.99008 1.04639 1.19609 0.95724 0.89838 0.88134 1.44063 1.13689 1.66312 1.08267 1.21024 0.88021 0.97707 0.90887 1.19578 0.91130 1.26479 1.00386 0.89792 1.24841 0.98535 0.99054 0.97972 1.70177 1.39206 1.33923 1.13231 0.86282 0.83406 0.78855 0.78255 1.21595 1.21786 1.20574 0.89028 0.92417 0.90060 0.77402 0.76975 0.86342 0.85790 0.93915 0.92272 0.92564 0.99069 0.95542 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 8.17 36.01 0.29 -1.63 16 2 C 0.19 3.84 6.78 -82.61 -0.56 3.28 16 3 N -0.55 -10.57 10.31 -8.67 -0.09 -10.66 16 4 C 0.39 6.47 7.75 -155.02 -1.20 5.26 16 5 N -0.86 -10.51 9.07 31.13 0.28 -10.23 16 6 C -0.25 -4.00 9.94 -39.22 -0.39 -4.39 16 7 C -0.03 -0.56 9.81 -39.32 -0.39 -0.95 16 8 C -0.19 -3.69 5.48 -104.46 -0.57 -4.27 16 9 C 0.20 3.99 5.29 -5.19 -0.03 3.97 16 10 N -0.60 -15.01 2.92 -182.50 -0.53 -15.54 16 11 C 0.17 4.26 9.00 59.84 0.54 4.80 16 12 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 13 H 0.08 2.09 4.86 -52.48 -0.26 1.84 16 14 C -0.01 -0.23 5.38 -17.43 -0.09 -0.32 16 15 N -0.92 -26.88 9.65 55.49 0.54 -26.34 16 16 Si 0.90 22.00 29.56 -169.99 -5.03 16.98 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H 0.09 1.91 6.95 -51.93 -0.36 1.55 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.08 1.47 5.05 -51.93 -0.26 1.21 16 23 H 0.40 4.45 8.95 -40.82 -0.37 4.08 16 24 H 0.40 3.64 8.82 -40.82 -0.36 3.28 16 25 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 26 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.04 0.81 7.92 -51.93 -0.41 0.39 16 28 H 0.06 1.16 6.27 -51.93 -0.33 0.83 16 29 H 0.06 1.55 6.70 -51.93 -0.35 1.20 16 30 H -0.01 -0.21 7.88 -51.93 -0.41 -0.62 16 31 H 0.03 0.73 7.45 -51.93 -0.39 0.34 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 262.44 15.07 3.95 3.95 Total: -1.00 -31.21 262.44 -7.29 -38.50 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.89 Total: 4.30 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.53 Total: -0.96 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.20 Total: -62.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.21 -7.29 -38.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232341423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.263 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds