Wall clock time and date at job start Sun Mar 29 2020 22:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31974 * 119.56937 * 2 1 4 4 C 1.32392 * 121.61961 * 180.02562 * 3 2 1 5 5 N 1.39004 * 119.70418 * 179.97438 * 4 3 2 6 6 C 1.39136 * 120.59250 * 0.02562 * 4 3 2 7 7 C 1.38304 * 119.09493 * 359.74432 * 6 4 3 8 8 C 1.38021 * 119.57331 * 180.02562 * 2 1 3 9 9 C 1.50700 * 120.33218 * 359.95047 * 8 2 1 10 10 N 1.46498 * 109.47706 * 280.32383 * 9 8 2 11 11 C 1.46495 * 119.99837 * 273.56994 * 10 9 8 12 12 C 1.36936 * 120.00171 * 93.83980 * 10 9 8 13 13 H 1.08003 * 119.99767 * 353.92532 * 12 10 9 14 14 C 1.38806 * 120.00115 * 173.92494 * 12 10 9 15 15 N 1.31617 * 120.00044 * 350.92175 * 14 12 10 16 16 Si 1.86802 * 120.00093 * 170.92679 * 14 12 10 17 17 H 1.48498 * 109.47361 * 89.99839 * 16 14 12 18 18 H 1.48495 * 109.46937 * 210.00012 * 16 14 12 19 19 H 1.48497 * 109.46931 * 329.99920 * 16 14 12 20 20 H 1.08995 * 109.47451 * 272.39155 * 1 2 3 21 21 H 1.09007 * 109.47173 * 32.39325 * 1 2 3 22 22 H 1.09004 * 109.46980 * 152.39015 * 1 2 3 23 23 H 0.97003 * 120.00122 * 0.02562 * 5 4 3 24 24 H 0.97003 * 120.00128 * 180.02562 * 5 4 3 25 25 H 1.07997 * 120.45352 * 179.97438 * 6 4 3 26 26 H 1.07998 * 120.75001 * 180.24678 * 7 6 4 27 27 H 1.09002 * 109.46566 * 160.32056 * 9 8 2 28 28 H 1.09002 * 109.47188 * 40.33118 * 9 8 2 29 29 H 1.09001 * 109.47513 * 244.40871 * 11 10 9 30 30 H 1.09006 * 109.47515 * 4.40995 * 11 10 9 31 31 H 1.09001 * 109.47723 * 124.40656 * 11 10 9 32 32 H 0.97002 * 120.00541 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1479 0.0000 4 6 3.4813 1.1952 -0.0005 5 7 4.1265 2.4265 -0.0010 6 6 4.2318 0.0236 -0.0016 7 6 3.5770 -1.1945 0.0033 8 6 2.1882 -1.2004 -0.0005 9 6 1.4325 -2.5043 0.0000 10 7 0.9745 -2.8028 1.3591 11 6 1.8567 -3.5099 2.2906 12 6 -0.2804 -2.4258 1.7571 13 1 -0.8956 -1.8236 1.1048 14 6 -0.7617 -2.8175 2.9987 15 7 -0.0925 -3.6938 3.7174 16 14 -2.3595 -2.1012 3.6495 17 1 -3.4964 -2.9528 3.2167 18 1 -2.3128 -2.0542 5.1329 19 1 -2.5393 -0.7270 3.1161 20 1 -0.3634 0.0429 1.0267 21 1 -0.3634 0.8678 -0.5506 22 1 -0.3633 -0.9107 -0.4763 23 1 3.6075 3.2460 -0.0006 24 1 5.0957 2.4662 -0.0018 25 1 5.3110 0.0649 -0.0024 26 1 4.1330 -2.1204 0.0065 27 1 2.0874 -3.3038 -0.3466 28 1 0.5720 -2.4258 -0.6645 29 1 1.4204 -4.4768 2.5414 30 1 2.8308 -3.6606 1.8252 31 1 1.9756 -2.9185 3.1985 32 1 -0.4286 -3.9673 4.5852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232341423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:09 Heat of formation + Delta-G solvation = 46.036777 kcal Electronic energy + Delta-G solvation = -15155.577027 eV Core-core repulsion = 12730.231312 eV Total energy + Delta-G solvation = -2425.345716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.15127 -37.76448 -35.70299 -33.85094 -33.05076 -31.39627 -28.89722 -27.90651 -26.35773 -23.57318 -23.32858 -21.83498 -18.80688 -18.16979 -17.72965 -16.94075 -16.26076 -15.93231 -15.61743 -15.12804 -14.72799 -14.50802 -14.00044 -13.72052 -13.63097 -13.09366 -12.99244 -12.78697 -12.66390 -12.38608 -12.13000 -11.72320 -11.59787 -11.14373 -10.58834 -10.41561 -10.27528 -8.88871 -8.50637 -7.64509 -5.09351 0.47124 0.68777 1.48371 1.50034 1.57558 2.56689 2.72865 3.06591 3.43216 3.77977 3.93404 4.09831 4.27086 4.34230 4.56719 4.73039 4.80685 4.88792 4.93261 4.94304 5.10196 5.30239 5.34630 5.57206 5.64802 5.72978 5.88310 5.91886 6.38591 6.53061 6.70176 7.25346 7.50373 7.98303 8.37404 9.32524 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034460 B = 0.008920 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.347861 B = 3138.257975 C = 3519.741104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.171 3.829 3 N -0.573 5.573 4 C 0.380 3.620 5 N -0.843 5.843 6 C -0.247 4.247 7 C -0.035 4.035 8 C -0.211 4.211 9 C 0.196 3.804 10 N -0.616 5.616 11 C 0.185 3.815 12 C -0.239 4.239 13 H 0.098 0.902 14 C -0.071 4.071 15 N -0.950 5.950 16 Si 0.958 3.042 17 H -0.285 1.285 18 H -0.303 1.303 19 H -0.269 1.269 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.404 0.596 24 H 0.419 0.581 25 H 0.155 0.845 26 H 0.145 0.855 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.023 0.977 31 H -0.008 1.008 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 8.134 -9.121 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.034 3.966 3 N -0.293 5.293 4 C 0.141 3.859 5 N -0.389 5.389 6 C -0.271 4.271 7 C -0.062 4.062 8 C -0.218 4.218 9 C 0.070 3.930 10 N -0.338 5.338 11 C 0.040 3.960 12 C -0.369 4.369 13 H 0.116 0.884 14 C -0.263 4.263 15 N -0.601 5.601 16 Si 0.787 3.213 17 H -0.212 1.212 18 H -0.230 1.230 19 H -0.194 1.194 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.234 0.766 24 H 0.251 0.749 25 H 0.173 0.827 26 H 0.163 0.837 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.011 0.989 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.853 8.793 -8.977 14.818 hybrid contribution -0.178 -0.207 0.981 1.018 sum 7.675 8.586 -7.996 14.020 Atomic orbital electron populations 1.20853 0.89134 1.02784 1.02474 1.20823 0.96703 0.87272 0.91772 1.66914 1.08789 1.30546 1.23065 1.18619 0.88307 0.87918 0.91035 1.42027 1.09546 1.03637 1.83704 1.21513 1.01461 0.91350 1.12795 1.21460 0.93295 0.98599 0.92827 1.21501 0.95337 0.97987 1.07018 1.19724 0.96454 0.91056 0.85807 1.44298 1.13273 1.66377 1.09873 1.20662 0.89417 0.95687 0.90224 1.20033 0.91870 1.24825 1.00171 0.88437 1.25573 1.01667 1.00224 0.98850 1.70380 1.40766 1.35765 1.13206 0.85375 0.80378 0.78708 0.76807 1.21173 1.22988 1.19360 0.91627 0.90793 0.89997 0.76630 0.74923 0.82731 0.83743 0.92110 0.91793 0.95304 0.95835 0.98950 0.95091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.51 8.17 71.24 0.58 -2.93 16 2 C 0.17 6.62 6.78 42.49 0.29 6.91 16 3 N -0.57 -21.03 10.31 -181.34 -1.87 -22.89 16 4 C 0.38 11.60 7.75 133.07 1.03 12.63 16 5 N -0.84 -17.66 9.07 -55.43 -0.50 -18.16 16 6 C -0.25 -6.96 9.94 22.50 0.22 -6.73 16 7 C -0.04 -1.13 9.81 22.44 0.22 -0.91 16 8 C -0.21 -7.92 5.48 -19.76 -0.11 -8.03 16 9 C 0.20 7.75 5.29 85.63 0.45 8.21 16 10 N -0.62 -30.55 2.92 -731.31 -2.13 -32.68 16 11 C 0.18 9.44 9.00 127.77 1.15 10.59 16 12 C -0.24 -12.79 8.60 84.03 0.72 -12.06 16 13 H 0.10 4.83 4.86 -2.91 -0.01 4.82 16 14 C -0.07 -4.02 5.38 84.86 0.46 -3.57 16 15 N -0.95 -57.27 9.65 21.65 0.21 -57.06 16 16 Si 0.96 45.91 29.56 68.60 2.03 47.94 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H 0.07 2.74 6.95 -2.39 -0.02 2.72 16 21 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 22 H 0.08 2.92 5.05 -2.38 -0.01 2.91 16 23 H 0.40 7.81 8.95 -92.71 -0.83 6.98 16 24 H 0.42 5.88 8.82 -92.71 -0.82 5.06 16 25 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.06 2.16 7.92 -2.39 -0.02 2.14 16 28 H 0.06 2.43 6.27 -2.39 -0.01 2.42 16 29 H 0.03 1.61 6.70 -2.39 -0.02 1.60 16 30 H 0.02 1.01 7.88 -2.38 -0.02 0.99 16 31 H -0.01 -0.47 7.45 -2.39 -0.02 -0.49 16 32 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -67.37 262.44 2.26 -65.11 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.49 Total: 13.66 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.02 Total: 4.09 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -4.30 Total: -130.80 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -67.37 2.26 -65.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232341423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.146 kcal (2) G-P(sol) polarization free energy of solvation -67.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds