Wall clock time and date at job start Sun Mar 29 2020 22:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 C 1.50697 * 126.59333 * 180.20828 * 5 4 3 7 7 N 1.46898 * 109.47083 * 95.02498 * 6 5 4 8 8 C 1.47477 * 111.00343 * 265.96931 * 7 6 5 9 9 C 1.53506 * 87.93582 * 221.29641 * 8 7 6 10 10 C 1.50707 * 114.34108 * 139.68158 * 9 8 7 11 11 H 1.07997 * 120.00176 * 266.07645 * 10 9 8 12 12 C 1.37879 * 119.99882 * 86.08176 * 10 9 8 13 13 N 1.31515 * 119.99692 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47120 * 59.99616 * 14 12 10 16 16 H 1.48500 * 109.47423 * 179.97438 * 14 12 10 17 17 H 1.48508 * 109.47200 * 299.99695 * 14 12 10 18 18 C 1.47479 * 111.00174 * 170.00037 * 7 6 5 19 19 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 20 20 H 0.96995 * 126.39762 * 0.02562 * 19 2 1 21 21 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 22 22 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 23 23 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 24 24 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 25 25 H 1.09002 * 109.47183 * 215.02472 * 6 5 4 26 26 H 1.09003 * 109.47025 * 335.02695 * 6 5 4 27 27 H 1.09004 * 113.47688 * 336.06619 * 8 7 6 28 28 H 1.09000 * 113.47531 * 106.52560 * 8 7 6 29 29 H 1.08995 * 114.17449 * 272.37475 * 9 8 7 30 30 H 0.97002 * 119.99496 * 180.02562 * 13 12 10 31 31 H 1.09003 * 113.47697 * 253.47572 * 18 7 6 32 32 H 1.09006 * 113.47498 * 23.87618 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 6 4.8277 -1.5275 0.0070 7 7 5.1600 -1.9008 1.3883 8 6 6.1399 -0.9635 1.9680 9 6 6.8449 -2.1748 2.5943 10 6 8.3499 -2.1094 2.5492 11 1 8.8865 -2.5739 1.7352 12 6 9.0417 -1.4566 3.5474 13 7 8.3881 -0.8906 4.5385 14 14 10.9070 -1.3761 3.4920 15 1 11.3360 -0.6871 2.2484 16 1 11.4053 -0.6236 4.6713 17 1 11.4628 -2.7531 3.5119 18 6 6.2133 -2.9327 1.4182 19 7 2.2942 -1.0973 0.0053 20 1 1.9953 -2.0200 0.0095 21 1 -0.3633 0.0048 1.0277 22 1 -0.3634 0.8874 -0.5180 23 1 -0.3633 -0.8925 -0.5095 24 1 4.4098 1.3413 -0.0058 25 1 4.6430 -2.4283 -0.5784 26 1 5.6591 -0.9743 -0.4299 27 1 6.7432 -0.4486 1.2204 28 1 5.7086 -0.2841 2.7032 29 1 6.4556 -2.4621 3.5710 30 1 8.8749 -0.4310 5.2405 31 1 5.8441 -3.9224 1.6873 32 1 6.8355 -2.9440 0.5233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232458680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:09 Heat of formation + Delta-G solvation = 85.263366 kcal Electronic energy + Delta-G solvation = -14544.734620 eV Core-core repulsion = 12121.089897 eV Total energy + Delta-G solvation = -2423.644723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.84633 -38.87042 -33.09949 -32.29621 -32.02405 -29.78454 -26.92033 -25.03859 -24.67295 -22.41668 -20.76992 -20.26265 -18.64285 -17.20270 -16.54688 -15.32499 -14.77000 -14.56740 -14.19144 -13.97795 -13.58025 -13.25649 -12.68720 -12.60509 -12.38220 -11.94908 -11.75688 -11.26464 -10.97374 -10.71434 -10.36646 -9.92546 -9.76101 -9.68645 -9.32757 -8.99125 -8.46678 -8.12033 -7.93243 -6.06834 -4.12166 2.23194 3.27188 3.29341 3.34014 3.34999 3.36634 4.38871 4.57820 4.92861 5.05758 5.17628 5.26694 5.42693 5.44486 5.56384 5.76022 5.81922 5.98555 6.03894 6.27363 6.38522 6.51598 6.60939 6.66891 6.98387 7.11540 7.14483 7.57683 7.69077 7.87009 8.00577 8.28689 8.34025 8.90829 9.53170 11.02686 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059573 B = 0.005548 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.901355 B = 5045.774094 C = 5187.327229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.191 3.809 3 N -0.491 5.491 4 C -0.025 4.025 5 C 0.009 3.991 6 C 0.089 3.911 7 N -0.484 5.484 8 C 0.008 3.992 9 C 0.042 3.958 10 C -0.519 4.519 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.006 4.006 19 N -0.558 5.558 20 H 0.416 0.584 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.166 0.834 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.263 0.737 31 H 0.061 0.939 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 -1.424 -8.978 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 N -0.212 5.212 4 C -0.173 4.173 5 C -0.107 4.107 6 C -0.041 4.041 7 N -0.207 5.207 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.557 4.557 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.522 5.522 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.134 4.134 19 N -0.161 5.161 20 H 0.253 0.747 21 H 0.096 0.904 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.184 0.816 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.985 -0.563 -8.511 14.711 hybrid contribution 1.934 -0.938 -0.456 2.197 sum -10.051 -1.500 -8.968 13.553 Atomic orbital electron populations 1.20112 0.85211 1.03539 1.03339 1.23130 0.95360 0.81964 1.06801 1.70167 1.02271 1.28690 1.20058 1.22048 0.94529 0.92246 1.08522 1.21186 0.85170 0.95437 1.08910 1.21074 0.92033 0.96862 0.94104 1.68920 1.30406 1.08385 1.12984 1.24118 0.91680 0.97890 0.98358 1.20081 0.94618 0.89870 0.93110 1.20977 0.90693 1.35542 1.08512 0.92438 1.25019 0.98385 0.95084 0.95051 1.69961 1.35681 1.35116 1.11456 0.86668 0.85631 0.78220 0.77540 1.20195 1.21214 1.20161 1.24038 0.92283 0.96019 1.01109 1.43026 1.06415 1.09727 1.56962 0.74728 0.90380 0.89451 0.91174 0.81640 0.91306 0.91460 0.92566 0.91754 0.91862 0.92741 0.92011 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.01 0.38 -0.20 16 2 C 0.19 2.70 8.15 -155.42 -1.27 1.44 16 3 N -0.49 -8.51 11.25 -10.81 -0.12 -8.63 16 4 C -0.03 -0.44 11.79 -17.81 -0.21 -0.65 16 5 C 0.01 0.15 6.82 -81.60 -0.56 -0.41 16 6 C 0.09 1.46 5.37 -4.98 -0.03 1.43 16 7 N -0.48 -9.57 6.32 -246.14 -1.55 -11.13 16 8 C 0.01 0.19 7.28 -7.57 -0.06 0.13 16 9 C 0.04 1.05 3.76 -91.24 -0.34 0.70 16 10 C -0.52 -13.93 8.83 -34.44 -0.30 -14.23 16 11 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -25.50 13.26 55.43 0.74 -24.77 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.01 -0.12 7.24 -7.56 -0.05 -0.18 16 19 N -0.56 -7.67 6.15 -6.54 -0.04 -7.71 16 20 H 0.42 4.44 8.96 -40.82 -0.37 4.08 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 25 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.07 1.10 7.30 -51.93 -0.38 0.72 16 27 H 0.06 1.27 7.38 -51.93 -0.38 0.88 16 28 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 LS Contribution 275.65 15.07 4.15 4.15 Total: -1.00 -30.79 275.65 -8.84 -39.64 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.46 Total: 2.79 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.54 Total: -10.20 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.98 Total: -52.23 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.79 -8.84 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232458680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.899 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds