Wall clock time and date at job start Sun Mar 29 2020 22:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30502 * 125.64425 * 2 1 4 4 C 1.34127 * 109.25683 * 180.14781 * 3 2 1 5 5 C 1.34672 * 108.01948 * 359.61488 * 4 3 2 6 6 C 1.50697 * 126.59333 * 180.20828 * 5 4 3 7 7 N 1.46898 * 109.47083 * 95.02498 * 6 5 4 8 8 C 1.47477 * 111.00343 * 265.96931 * 7 6 5 9 9 C 1.53506 * 87.93582 * 221.29641 * 8 7 6 10 10 C 1.50707 * 114.34108 * 139.68158 * 9 8 7 11 11 H 1.07997 * 120.00176 * 266.07645 * 10 9 8 12 12 C 1.37879 * 119.99882 * 86.08176 * 10 9 8 13 13 N 1.31515 * 119.99692 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99994 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47120 * 59.99616 * 14 12 10 16 16 H 1.48500 * 109.47423 * 179.97438 * 14 12 10 17 17 H 1.48508 * 109.47200 * 299.99695 * 14 12 10 18 18 C 1.47479 * 111.00174 * 170.00037 * 7 6 5 19 19 N 1.35041 * 125.65474 * 179.72125 * 2 1 3 20 20 H 0.96995 * 126.39762 * 0.02562 * 19 2 1 21 21 H 1.09004 * 109.47126 * 270.26935 * 1 2 3 22 22 H 1.08994 * 109.47481 * 30.27445 * 1 2 3 23 23 H 1.09006 * 109.46847 * 150.28064 * 1 2 3 24 24 H 1.08002 * 125.99481 * 179.88589 * 4 3 2 25 25 H 1.09002 * 109.47183 * 215.02472 * 6 5 4 26 26 H 1.09003 * 109.47025 * 335.02695 * 6 5 4 27 27 H 1.09004 * 113.47688 * 336.06619 * 8 7 6 28 28 H 1.09000 * 113.47531 * 106.52560 * 8 7 6 29 29 H 1.08995 * 114.17449 * 272.37475 * 9 8 7 30 30 H 0.97002 * 119.99496 * 180.02562 * 13 12 10 31 31 H 1.09003 * 113.47697 * 253.47572 * 18 7 6 32 32 H 1.09006 * 113.47498 * 23.87618 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6821 -0.0033 5 6 3.5927 -0.6640 0.0032 6 6 4.8277 -1.5275 0.0070 7 7 5.1600 -1.9008 1.3883 8 6 6.1399 -0.9635 1.9680 9 6 6.8449 -2.1748 2.5943 10 6 8.3499 -2.1094 2.5492 11 1 8.8865 -2.5739 1.7352 12 6 9.0417 -1.4566 3.5474 13 7 8.3881 -0.8906 4.5385 14 14 10.9070 -1.3761 3.4920 15 1 11.3360 -0.6871 2.2484 16 1 11.4053 -0.6236 4.6713 17 1 11.4628 -2.7531 3.5119 18 6 6.2133 -2.9327 1.4182 19 7 2.2942 -1.0973 0.0053 20 1 1.9953 -2.0200 0.0095 21 1 -0.3633 0.0048 1.0277 22 1 -0.3634 0.8874 -0.5180 23 1 -0.3633 -0.8925 -0.5095 24 1 4.4098 1.3413 -0.0058 25 1 4.6430 -2.4283 -0.5784 26 1 5.6591 -0.9743 -0.4299 27 1 6.7432 -0.4486 1.2204 28 1 5.7086 -0.2841 2.7032 29 1 6.4556 -2.4621 3.5710 30 1 8.8749 -0.4310 5.2405 31 1 5.8441 -3.9224 1.6873 32 1 6.8355 -2.9440 0.5233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232458680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:08 Heat of formation + Delta-G solvation = 63.093662 kcal Electronic energy + Delta-G solvation = -14545.695971 eV Core-core repulsion = 12121.089897 eV Total energy + Delta-G solvation = -2424.606074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.02516 -40.56895 -34.91429 -33.67649 -33.24753 -31.10176 -28.47921 -26.71270 -26.31150 -24.03062 -21.97325 -21.44206 -20.47123 -18.76135 -18.13918 -16.82749 -16.43584 -16.20214 -15.58204 -15.49686 -14.88678 -14.57030 -13.91443 -13.87563 -13.45244 -13.39479 -13.18679 -13.02776 -12.80702 -12.46049 -12.15942 -11.71374 -11.25390 -10.95974 -10.95082 -10.88081 -10.50094 -9.77820 -9.18640 -8.14622 -6.26549 1.04644 1.44590 1.45651 1.53630 2.10491 2.21470 2.43473 3.14943 3.36977 3.59795 3.89517 4.08486 4.26983 4.30199 4.46646 4.49692 4.57802 4.67941 4.77021 4.84303 4.91376 4.95157 5.10522 5.20392 5.24107 5.49304 5.62378 5.75538 5.84415 6.27647 6.33446 6.57296 6.83640 7.11305 7.42633 8.95054 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059573 B = 0.005548 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.901355 B = 5045.774094 C = 5187.327229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.201 3.799 3 N -0.532 5.532 4 C -0.049 4.049 5 C -0.002 4.002 6 C 0.093 3.907 7 N -0.482 5.482 8 C 0.021 3.979 9 C 0.020 3.980 10 C -0.530 4.530 11 H 0.064 0.936 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.958 3.042 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.267 1.267 18 C 0.013 3.987 19 N -0.549 5.549 20 H 0.431 0.569 21 H 0.089 0.911 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.161 0.839 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -2.545 -10.503 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 N -0.253 5.253 4 C -0.197 4.197 5 C -0.119 4.119 6 C -0.036 4.036 7 N -0.205 5.205 8 C -0.109 4.109 9 C 0.001 3.999 10 C -0.568 4.568 11 H 0.082 0.918 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.783 3.217 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.116 4.116 19 N -0.154 5.154 20 H 0.272 0.728 21 H 0.107 0.893 22 H 0.112 0.888 23 H 0.121 0.879 24 H 0.179 0.821 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.620 -1.717 -10.056 16.228 hybrid contribution 2.014 -0.592 0.003 2.099 sum -10.606 -2.309 -10.053 14.795 Atomic orbital electron populations 1.20349 0.81648 1.05480 1.04608 1.24056 0.97170 0.81252 1.03855 1.70159 1.02526 1.30490 1.22144 1.22195 0.94951 0.93090 1.09476 1.21068 0.86120 0.94992 1.09671 1.21064 0.92205 0.98214 0.92101 1.68816 1.29191 1.06953 1.15529 1.23830 0.92134 0.97046 0.97857 1.20036 0.94143 0.92543 0.93216 1.21364 0.91964 1.34966 1.08534 0.91800 1.25857 1.03118 0.94827 0.94752 1.70103 1.37482 1.36363 1.12350 0.85608 0.79944 0.78509 0.77589 1.19307 1.21336 1.19209 1.23851 0.91944 0.96372 0.99394 1.43003 1.05460 1.10654 1.56288 0.72846 0.89276 0.88846 0.87947 0.82119 0.88376 0.91330 0.92543 0.94590 0.95530 0.92915 0.90395 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.20 5.30 8.15 138.13 1.13 6.43 16 3 N -0.53 -18.14 11.25 -188.13 -2.12 -20.26 16 4 C -0.05 -1.72 11.79 83.52 0.98 -0.73 16 5 C 0.00 -0.05 6.82 40.95 0.28 0.23 16 6 C 0.09 2.88 5.37 85.56 0.46 3.34 16 7 N -0.48 -18.55 6.32 -932.64 -5.89 -24.44 16 8 C 0.02 0.96 7.28 83.56 0.61 1.56 16 9 C 0.02 0.99 3.76 -11.20 -0.04 0.95 16 10 C -0.53 -28.49 8.83 25.60 0.23 -28.27 16 11 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 12 C 0.01 0.76 5.46 84.66 0.46 1.22 16 13 N -0.92 -54.62 13.26 21.45 0.28 -54.34 16 14 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 C 0.01 0.50 7.24 83.56 0.61 1.10 16 19 N -0.55 -13.86 6.15 -174.60 -1.07 -14.93 16 20 H 0.43 7.88 8.96 -92.71 -0.83 7.05 16 21 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.16 5.45 8.06 -2.91 -0.02 5.43 16 25 H 0.10 2.47 8.08 -2.39 -0.02 2.45 16 26 H 0.07 2.13 7.30 -2.39 -0.02 2.11 16 27 H 0.06 2.57 7.38 -2.38 -0.02 2.56 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.07 2.56 7.87 -2.38 -0.02 2.54 16 Total: -1.00 -67.24 275.65 -1.03 -68.26 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.28 Total: 15.21 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.46 Total: -14.37 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -8.80 Total: -113.97 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.24 -1.03 -68.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232458680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.358 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds