Wall clock time and date at job start Sun Mar 29 2020 21:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38168 * 119.97621 * 2 1 4 4 C 1.38705 * 119.94209 * 180.02562 * 3 2 1 5 5 O 1.35908 * 120.05574 * 179.97438 * 4 3 2 6 6 C 1.38756 * 119.89461 * 359.97438 * 4 3 2 7 7 C 1.38127 * 119.93970 * 359.97438 * 6 4 3 8 8 C 1.50694 * 119.96986 * 180.02562 * 7 6 4 9 9 N 1.46498 * 109.47458 * 270.02322 * 8 7 6 10 10 C 1.46497 * 120.00095 * 89.99666 * 9 8 7 11 11 C 1.36942 * 119.99645 * 270.00294 * 9 8 7 12 12 H 1.08003 * 119.99811 * 141.97883 * 11 9 8 13 13 C 1.38810 * 120.00002 * 321.96924 * 11 9 8 14 14 N 1.31620 * 119.99756 * 157.12987 * 13 11 9 15 15 Si 1.86797 * 120.00157 * 337.13395 * 13 11 9 16 16 H 1.48493 * 109.47098 * 95.67343 * 15 13 11 17 17 H 1.48504 * 109.46862 * 215.67096 * 15 13 11 18 18 H 1.48493 * 109.46938 * 335.66993 * 15 13 11 19 19 C 1.38250 * 119.97035 * 180.02562 * 2 1 3 20 20 H 1.09005 * 109.46508 * 269.97290 * 1 2 3 21 21 H 1.09005 * 109.46812 * 29.96671 * 1 2 3 22 22 H 1.09000 * 109.47826 * 149.97268 * 1 2 3 23 23 H 1.07996 * 120.02905 * 0.04986 * 3 2 1 24 24 H 0.96705 * 113.99800 * 270.02847 * 5 4 3 25 25 H 1.07997 * 120.03005 * 180.02562 * 6 4 3 26 26 H 1.09002 * 109.47106 * 30.02276 * 8 7 6 27 27 H 1.09004 * 109.47203 * 150.02185 * 8 7 6 28 28 H 1.08999 * 109.46995 * 85.64348 * 10 9 8 29 29 H 1.09005 * 109.46989 * 205.63822 * 10 9 8 30 30 H 1.09000 * 109.47605 * 325.64247 * 10 9 8 31 31 H 0.96995 * 120.00157 * 180.02562 * 14 13 11 32 32 H 1.07997 * 119.94225 * 0.25341 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1960 -0.0005 5 8 4.2658 2.3720 -0.0011 6 6 4.2752 -0.0073 -0.0005 7 6 3.5804 -1.2011 0.0005 8 6 4.3300 -2.5084 0.0011 9 7 4.5729 -2.9327 -1.3799 10 6 5.7949 -2.5138 -2.0707 11 6 3.6576 -3.7210 -2.0249 12 1 3.4518 -3.5622 -3.0733 13 6 2.9943 -4.7240 -1.3315 14 7 1.8377 -5.1734 -1.7706 15 14 3.7430 -5.4358 0.2247 16 1 3.1708 -4.7470 1.4092 17 1 3.4387 -6.8874 0.3013 18 1 5.2147 -5.2392 0.2007 19 6 2.1976 -1.1976 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3633 0.8903 -0.5133 22 1 -0.3635 -0.8897 -0.5142 23 1 1.6574 2.1322 0.0008 24 1 4.4622 2.7123 -0.8847 25 1 5.3552 -0.0105 -0.0005 26 1 5.2829 -2.3806 0.5149 27 1 3.7387 -3.2661 0.5154 28 1 6.6013 -3.2087 -1.8363 29 1 5.6206 -2.5091 -3.1467 30 1 6.0722 -1.5118 -1.7432 31 1 1.3740 -5.8740 -1.2859 32 1 1.6562 -2.1321 -0.0051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232884484.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:26 Heat of formation + Delta-G solvation = 0.210356 kcal Electronic energy + Delta-G solvation = -15066.149486 eV Core-core repulsion = 12606.523836 eV Total energy + Delta-G solvation = -2459.625649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42116 -36.88016 -35.57893 -32.40354 -31.42483 -29.79460 -26.65101 -26.58182 -25.55604 -21.82851 -21.31378 -20.18390 -17.61321 -16.64430 -15.80704 -15.66764 -15.07944 -14.58566 -13.99073 -13.52498 -13.25715 -12.96556 -12.69560 -12.38731 -12.26093 -11.93381 -11.61134 -11.25963 -11.14644 -10.90451 -10.73279 -10.53740 -10.14929 -9.91688 -9.66285 -8.57300 -8.17263 -8.02158 -6.87615 -6.05388 -3.45401 1.76806 1.81838 3.27284 3.43674 3.49378 4.04224 4.47794 4.56354 5.12691 5.24246 5.32085 5.38260 5.55550 5.76314 5.85255 5.91422 5.97926 6.06029 6.18290 6.25912 6.38016 6.47444 6.59417 6.64643 6.68232 6.84875 7.03330 7.28761 7.32700 7.95616 7.99619 8.33584 8.91803 9.64975 10.06394 11.09761 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.010416 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.970646 B = 2687.527893 C = 3222.635933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 C -0.161 4.161 4 C 0.092 3.908 5 O -0.505 6.505 6 C -0.146 4.146 7 C -0.060 4.060 8 C 0.167 3.833 9 N -0.603 5.603 10 C 0.125 3.875 11 C -0.267 4.267 12 H 0.078 0.922 13 C 0.038 3.962 14 N -0.895 5.895 15 Si 0.871 3.129 16 H -0.283 1.283 17 H -0.299 1.299 18 H -0.268 1.268 19 C -0.098 4.098 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.117 0.883 24 H 0.383 0.617 25 H 0.118 0.882 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.010 0.990 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.264 0.736 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 10.580 3.495 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.179 4.179 4 C 0.049 3.951 5 O -0.314 6.314 6 C -0.166 4.166 7 C -0.063 4.063 8 C 0.042 3.958 9 N -0.326 5.326 10 C -0.020 4.020 11 C -0.396 4.396 12 H 0.095 0.905 13 C -0.163 4.163 14 N -0.535 5.535 15 Si 0.701 3.299 16 H -0.211 1.211 17 H -0.227 1.227 18 H -0.193 1.193 19 C -0.117 4.117 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.135 0.865 24 H 0.237 0.763 25 H 0.136 0.864 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.572 10.358 4.079 11.243 hybrid contribution 0.355 -0.350 0.266 0.565 sum 1.927 10.008 4.345 11.079 Atomic orbital electron populations 1.20763 0.91403 1.02743 1.01885 1.19762 0.95870 0.92678 0.99402 1.21050 0.93250 0.97775 1.05873 1.18367 0.89842 0.84754 1.02181 1.84793 1.76608 1.36870 1.33137 1.21196 0.99761 0.91483 1.04130 1.20800 0.94276 0.96266 0.94948 1.20291 0.96643 0.90956 0.87948 1.44031 1.19951 1.57214 1.11399 1.21092 0.88109 0.96009 0.96788 1.18785 1.15569 1.08771 0.96469 0.90465 1.25449 0.96166 0.96721 0.97932 1.69886 1.12774 1.29735 1.41122 0.87019 0.81062 0.78022 0.83826 1.21105 1.22661 1.19296 1.21095 0.93959 0.97639 0.99035 0.91585 0.92046 0.91028 0.86463 0.76272 0.86387 0.93201 0.91858 0.97229 0.93583 0.95427 0.92630 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 36.00 0.36 -1.23 16 2 C -0.08 -1.35 5.88 -104.64 -0.62 -1.96 16 3 C -0.16 -2.63 9.64 -39.43 -0.38 -3.01 16 4 C 0.09 1.55 6.70 -39.22 -0.26 1.29 16 5 O -0.50 -7.25 13.50 -19.45 -0.26 -7.51 16 6 C -0.15 -2.65 9.64 -39.43 -0.38 -3.03 16 7 C -0.06 -1.22 5.46 -104.65 -0.57 -1.79 16 8 C 0.17 3.69 4.65 -5.20 -0.02 3.66 16 9 N -0.60 -14.46 2.45 -182.50 -0.45 -14.90 16 10 C 0.13 2.52 10.70 59.85 0.64 3.16 16 11 C -0.27 -7.41 9.88 -15.06 -0.15 -7.56 16 12 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 13 C 0.04 1.08 5.29 -17.43 -0.09 0.99 16 14 N -0.89 -26.55 13.97 55.49 0.78 -25.78 16 15 Si 0.87 21.80 25.10 -169.99 -4.27 17.53 16 16 H -0.28 -6.85 6.68 56.52 0.38 -6.47 16 17 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.10 -2.01 9.35 -39.56 -0.37 -2.38 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 22 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 23 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 24 H 0.38 3.66 9.06 45.56 0.41 4.08 16 25 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 26 H 0.05 0.99 8.01 -51.93 -0.42 0.57 16 27 H 0.06 1.51 3.32 -51.93 -0.17 1.33 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.05 0.91 8.00 -51.93 -0.42 0.50 16 30 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -30.94 272.63 -5.48 -36.43 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.55 Total: 1.99 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.84 Total: -11.86 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.33 Total: -40.68 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.26 Total: -7.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.27 Total: 17.53 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.94 -5.48 -36.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232884484.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.636 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds