Wall clock time and date at job start Sun Mar 29 2020 21:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38168 * 119.97621 * 2 1 4 4 C 1.38705 * 119.94209 * 180.02562 * 3 2 1 5 5 O 1.35908 * 120.05574 * 179.97438 * 4 3 2 6 6 C 1.38756 * 119.89461 * 359.97438 * 4 3 2 7 7 C 1.38127 * 119.93970 * 359.97438 * 6 4 3 8 8 C 1.50694 * 119.96986 * 180.02562 * 7 6 4 9 9 N 1.46498 * 109.47458 * 270.02322 * 8 7 6 10 10 C 1.46497 * 120.00095 * 89.99666 * 9 8 7 11 11 C 1.36942 * 119.99645 * 270.00294 * 9 8 7 12 12 H 1.08003 * 119.99811 * 141.97883 * 11 9 8 13 13 C 1.38810 * 120.00002 * 321.96924 * 11 9 8 14 14 N 1.31620 * 119.99756 * 157.12987 * 13 11 9 15 15 Si 1.86797 * 120.00157 * 337.13395 * 13 11 9 16 16 H 1.48493 * 109.47098 * 95.67343 * 15 13 11 17 17 H 1.48504 * 109.46862 * 215.67096 * 15 13 11 18 18 H 1.48493 * 109.46938 * 335.66993 * 15 13 11 19 19 C 1.38250 * 119.97035 * 180.02562 * 2 1 3 20 20 H 1.09005 * 109.46508 * 269.97290 * 1 2 3 21 21 H 1.09005 * 109.46812 * 29.96671 * 1 2 3 22 22 H 1.09000 * 109.47826 * 149.97268 * 1 2 3 23 23 H 1.07996 * 120.02905 * 0.04986 * 3 2 1 24 24 H 0.96705 * 113.99800 * 270.02847 * 5 4 3 25 25 H 1.07997 * 120.03005 * 180.02562 * 6 4 3 26 26 H 1.09002 * 109.47106 * 30.02276 * 8 7 6 27 27 H 1.09004 * 109.47203 * 150.02185 * 8 7 6 28 28 H 1.08999 * 109.46995 * 85.64348 * 10 9 8 29 29 H 1.09005 * 109.46989 * 205.63822 * 10 9 8 30 30 H 1.09000 * 109.47605 * 325.64247 * 10 9 8 31 31 H 0.96995 * 120.00157 * 180.02562 * 14 13 11 32 32 H 1.07997 * 119.94225 * 0.25341 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1960 -0.0005 5 8 4.2658 2.3720 -0.0011 6 6 4.2752 -0.0073 -0.0005 7 6 3.5804 -1.2011 0.0005 8 6 4.3300 -2.5084 0.0011 9 7 4.5729 -2.9327 -1.3799 10 6 5.7949 -2.5138 -2.0707 11 6 3.6576 -3.7210 -2.0249 12 1 3.4518 -3.5622 -3.0733 13 6 2.9943 -4.7240 -1.3315 14 7 1.8377 -5.1734 -1.7706 15 14 3.7430 -5.4358 0.2247 16 1 3.1708 -4.7470 1.4092 17 1 3.4387 -6.8874 0.3013 18 1 5.2147 -5.2392 0.2007 19 6 2.1976 -1.1976 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3633 0.8903 -0.5133 22 1 -0.3635 -0.8897 -0.5142 23 1 1.6574 2.1322 0.0008 24 1 4.4622 2.7123 -0.8847 25 1 5.3552 -0.0105 -0.0005 26 1 5.2829 -2.3806 0.5149 27 1 3.7387 -3.2661 0.5154 28 1 6.6013 -3.2087 -1.8363 29 1 5.6206 -2.5091 -3.1467 30 1 6.0722 -1.5118 -1.7432 31 1 1.3740 -5.8740 -1.2859 32 1 1.6562 -2.1321 -0.0051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232884484.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:25 Heat of formation + Delta-G solvation = -20.777008 kcal Electronic energy + Delta-G solvation = -15067.059566 eV Core-core repulsion = 12606.523836 eV Total energy + Delta-G solvation = -2460.535730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77975 -38.29220 -37.18110 -34.12431 -33.22843 -31.17869 -28.29908 -27.97400 -27.33367 -23.47949 -22.82807 -21.72369 -19.06662 -18.43565 -17.39395 -17.15782 -16.67612 -15.97271 -15.77774 -15.14999 -14.88240 -14.41387 -14.27880 -14.08647 -13.58020 -13.45177 -13.18486 -12.75023 -12.69116 -12.59043 -12.33251 -12.20128 -11.91753 -11.62868 -11.38167 -10.67600 -9.56648 -9.41259 -8.81108 -8.22724 -5.60386 0.38936 0.42853 1.28094 1.38739 1.49511 2.39130 2.64758 3.08124 3.33568 3.54398 3.90442 3.96498 4.24143 4.35339 4.46131 4.54368 4.63500 4.68110 4.75506 4.80558 4.97354 5.02357 5.08993 5.12932 5.27465 5.47484 5.62491 5.80939 5.90978 6.00056 6.14535 6.90166 6.93817 7.58103 8.01595 8.96565 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.010416 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.970646 B = 2687.527893 C = 3222.635933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.157 4.157 4 C 0.105 3.895 5 O -0.504 6.504 6 C -0.151 4.151 7 C -0.077 4.077 8 C 0.165 3.835 9 N -0.616 5.616 10 C 0.123 3.877 11 C -0.259 4.259 12 H 0.038 0.962 13 C -0.010 4.010 14 N -0.940 5.940 15 Si 0.933 3.067 16 H -0.274 1.274 17 H -0.304 1.304 18 H -0.259 1.259 19 C -0.131 4.131 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.054 0.946 23 H 0.148 0.852 24 H 0.408 0.592 25 H 0.134 0.866 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.021 0.979 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.264 0.736 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 12.987 4.629 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.078 4.078 3 C -0.175 4.175 4 C 0.060 3.940 5 O -0.317 6.317 6 C -0.171 4.171 7 C -0.079 4.079 8 C 0.040 3.960 9 N -0.340 5.340 10 C -0.021 4.021 11 C -0.389 4.389 12 H 0.056 0.944 13 C -0.207 4.207 14 N -0.583 5.583 15 Si 0.761 3.239 16 H -0.201 1.201 17 H -0.232 1.232 18 H -0.183 1.183 19 C -0.150 4.150 20 H 0.102 0.898 21 H 0.106 0.894 22 H 0.074 0.926 23 H 0.166 0.834 24 H 0.266 0.734 25 H 0.152 0.848 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.739 12.806 5.210 14.094 hybrid contribution 0.012 -0.911 -0.139 0.922 sum 2.751 11.895 5.070 13.220 Atomic orbital electron populations 1.20812 0.89427 1.03227 1.03172 1.20047 0.97461 0.92078 0.98217 1.21367 0.93406 0.98336 1.04419 1.18399 0.90103 0.85142 1.00320 1.84736 1.76169 1.35487 1.35295 1.21301 1.00567 0.91095 1.04096 1.20630 0.94199 0.96398 0.96719 1.20295 0.97719 0.91321 0.86666 1.44148 1.20545 1.57251 1.12067 1.21204 0.86801 0.97784 0.96305 1.18607 1.15891 1.09243 0.95161 0.94396 1.25974 0.96296 0.97236 1.01238 1.69998 1.14263 1.30883 1.43202 0.86018 0.80541 0.76629 0.80717 1.20136 1.23225 1.18260 1.21004 0.94405 0.97617 1.01937 0.89826 0.89429 0.92648 0.83394 0.73365 0.84770 0.90650 0.94080 0.96118 0.94099 0.92464 0.92719 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.97 10.01 71.24 0.71 -2.26 16 2 C -0.08 -2.61 5.88 -19.88 -0.12 -2.73 16 3 C -0.16 -4.60 9.64 22.36 0.22 -4.39 16 4 C 0.10 3.14 6.70 22.51 0.15 3.29 16 5 O -0.50 -12.18 13.50 -92.52 -1.25 -13.43 16 6 C -0.15 -5.09 9.64 22.37 0.22 -4.87 16 7 C -0.08 -3.07 5.46 -19.88 -0.11 -3.18 16 8 C 0.16 7.12 4.65 85.63 0.40 7.52 16 9 N -0.62 -29.34 2.45 -731.31 -1.79 -31.13 16 10 C 0.12 4.76 10.70 127.77 1.37 6.13 16 11 C -0.26 -14.78 9.88 84.03 0.83 -13.95 16 12 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 13 C -0.01 -0.59 5.29 84.86 0.45 -0.14 16 14 N -0.94 -58.12 13.97 21.65 0.30 -57.81 16 15 Si 0.93 45.95 25.10 68.60 1.72 47.67 16 16 H -0.27 -12.96 6.68 99.48 0.66 -12.30 16 17 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 18 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 19 C -0.13 -5.39 9.35 22.28 0.21 -5.18 16 20 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 21 H 0.09 1.89 8.08 -2.38 -0.02 1.87 16 22 H 0.05 1.66 8.09 -2.39 -0.02 1.65 16 23 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 24 H 0.41 5.83 9.06 -74.05 -0.67 5.16 16 25 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 26 H 0.08 2.81 8.01 -2.39 -0.02 2.79 16 27 H 0.04 1.95 3.32 -2.38 -0.01 1.94 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 1.59 8.00 -2.38 -0.02 1.57 16 30 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -67.97 272.63 3.71 -64.26 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.40 Total: 10.19 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 4.32 Total: -19.75 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -1.49 Total: -88.94 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.25 Total: -13.43 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.72 Total: 47.67 kcal Total: -67.97 3.71 -64.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232884484.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.485 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds