Wall clock time and date at job start Sun Mar 29 2020 21:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.97273 * 2 1 4 4 C 1.38242 * 120.11151 * 180.29521 * 3 2 1 5 5 C 1.38166 * 120.05490 * 359.44943 * 4 3 2 6 6 C 1.38712 * 119.94565 * 0.27772 * 5 4 3 7 7 O 1.35902 * 120.06099 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97194 * 179.74590 * 2 1 3 9 9 C 1.50705 * 120.02385 * 359.95858 * 8 2 1 10 10 N 1.46505 * 109.47027 * 270.01627 * 9 8 2 11 11 C 1.46498 * 120.00332 * 270.00341 * 10 9 8 12 12 C 1.36938 * 119.99442 * 90.00495 * 10 9 8 13 13 H 1.08002 * 120.00204 * 22.60775 * 12 10 9 14 14 C 1.38807 * 119.99708 * 202.60693 * 12 10 9 15 15 N 1.31617 * 120.00565 * 10.94970 * 14 12 10 16 16 Si 1.86808 * 120.00014 * 190.94736 * 14 12 10 17 17 H 1.48501 * 109.46699 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47172 * 120.00164 * 16 14 12 19 19 H 1.48500 * 109.47269 * 240.00394 * 16 14 12 20 20 H 1.08995 * 109.47163 * 270.25348 * 1 2 3 21 21 H 1.09004 * 109.46552 * 30.25469 * 1 2 3 22 22 H 1.09000 * 109.47089 * 150.25012 * 1 2 3 23 23 H 1.07999 * 119.94313 * 0.04870 * 3 2 1 24 24 H 1.07994 * 119.97482 * 179.72365 * 4 3 2 25 25 H 1.08000 * 120.03420 * 180.24842 * 5 4 3 26 26 H 0.96697 * 114.00160 * 89.99142 * 7 6 5 27 27 H 1.08997 * 109.47563 * 30.02040 * 9 8 2 28 28 H 1.09003 * 109.46668 * 150.02188 * 9 8 2 29 29 H 1.09004 * 109.46594 * 94.58411 * 11 10 9 30 30 H 1.08996 * 109.47052 * 214.58343 * 11 10 9 31 31 H 1.09000 * 109.46951 * 334.58683 * 11 10 9 32 32 H 0.96996 * 120.00696 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0062 5 6 4.2752 0.0071 -0.0008 6 6 3.5846 -1.1959 0.0049 7 8 4.2658 -2.3718 0.0096 8 6 2.1971 -1.1965 0.0053 9 6 1.4435 -2.5016 0.0120 10 7 1.1998 -2.9177 1.3955 11 6 2.1767 -3.7600 2.0900 12 6 0.0588 -2.5191 2.0393 13 1 -0.8101 -2.2279 1.4679 14 6 0.0191 -2.4894 3.4265 15 7 1.1286 -2.6327 4.1200 16 14 -1.6091 -2.2458 4.3093 17 1 -2.6988 -2.1111 3.3095 18 1 -1.8796 -3.4172 5.1810 19 1 -1.5432 -1.0160 5.1391 20 1 -0.3633 0.0045 1.0276 21 1 -0.3632 0.8878 -0.5178 22 1 -0.3633 -0.8922 -0.5099 23 1 1.6565 2.1324 0.0008 24 1 4.1176 2.1381 -0.0107 25 1 5.3552 0.0101 -0.0016 26 1 4.4636 -2.7083 0.8943 27 1 0.4909 -2.3738 -0.5021 28 1 2.0324 -3.2638 -0.4982 29 1 2.8545 -3.1305 2.6664 30 1 1.6556 -4.4427 2.7612 31 1 2.7466 -4.3336 1.3590 32 1 1.1009 -2.6116 5.0893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237488486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:38 Heat of formation + Delta-G solvation = 0.966281 kcal Electronic energy + Delta-G solvation = -15453.337770 eV Core-core repulsion = 12993.744900 eV Total energy + Delta-G solvation = -2459.592870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39006 -36.24586 -35.47054 -32.34236 -31.05251 -29.44456 -26.59817 -26.03825 -25.18285 -21.92278 -21.16521 -19.82868 -17.39142 -16.75142 -15.59773 -15.33136 -14.93979 -14.30309 -13.66407 -13.37040 -12.97191 -12.75023 -12.61294 -12.15437 -11.75930 -11.49330 -11.15496 -11.00886 -10.88148 -10.71077 -10.59883 -10.23381 -9.96685 -9.88503 -9.73000 -8.56741 -7.97077 -7.93059 -6.77012 -5.74616 -3.18401 1.86574 1.97280 3.35340 3.42762 3.44212 4.17333 4.49874 4.90721 5.37190 5.41563 5.44574 5.65023 5.70671 5.84312 5.94359 6.14382 6.20809 6.34966 6.50583 6.59811 6.70915 6.74765 6.85627 6.94255 7.06505 7.34002 7.36115 7.45913 7.67631 7.78736 8.24459 8.37616 9.21534 9.84120 10.33958 11.30413 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.010851 C = 0.009322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.525437 B = 2579.766314 C = 3002.870592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.054 4.054 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.159 4.159 6 C 0.109 3.891 7 O -0.502 6.502 8 C -0.102 4.102 9 C 0.179 3.821 10 N -0.590 5.590 11 C 0.163 3.837 12 C -0.246 4.246 13 H 0.072 0.928 14 C 0.001 3.999 15 N -0.907 5.907 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.291 1.291 20 H 0.082 0.918 21 H 0.049 0.951 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.387 0.613 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.001 0.999 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 4.138 -6.878 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.055 4.055 3 C -0.155 4.155 4 C -0.140 4.140 5 C -0.178 4.178 6 C 0.064 3.936 7 O -0.312 6.312 8 C -0.106 4.106 9 C 0.052 3.948 10 N -0.311 5.311 11 C 0.018 3.982 12 C -0.376 4.376 13 H 0.089 0.911 14 C -0.197 4.197 15 N -0.552 5.552 16 Si 0.731 3.269 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.218 1.218 20 H 0.101 0.899 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.134 0.866 26 H 0.243 0.757 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.834 4.119 -7.285 8.836 hybrid contribution -0.564 0.315 1.382 1.526 sum 2.270 4.434 -5.903 7.723 Atomic orbital electron populations 1.20857 0.91300 1.01220 1.03294 1.19621 0.96156 0.91973 0.97707 1.20926 0.94106 0.97329 1.03110 1.20738 0.94163 0.96962 1.02144 1.21218 0.99525 0.92336 1.04711 1.18255 0.89643 0.84804 1.00881 1.84676 1.76146 1.36849 1.33570 1.21275 0.93175 0.98238 0.97898 1.19937 0.96564 0.90035 0.88216 1.44081 1.21883 1.55362 1.09796 1.20839 0.91677 0.92697 0.92988 1.19286 0.89514 1.39781 0.88989 0.91074 1.25045 0.96745 1.01004 0.96930 1.70056 1.24846 1.54750 1.05581 0.86234 0.83458 0.77414 0.79802 1.20212 1.21648 1.21767 0.89907 0.93153 0.91320 0.86853 0.86786 0.86636 0.75718 0.92527 0.92907 0.95710 0.93559 0.98069 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 8.63 36.01 0.31 -1.65 16 2 C -0.05 -1.04 5.88 -104.64 -0.62 -1.65 16 3 C -0.14 -2.36 9.70 -39.56 -0.38 -2.75 16 4 C -0.12 -1.99 10.04 -39.61 -0.40 -2.39 16 5 C -0.16 -2.79 9.99 -39.43 -0.39 -3.18 16 6 C 0.11 2.13 6.68 -39.22 -0.26 1.87 16 7 O -0.50 -9.18 12.55 -19.43 -0.24 -9.42 16 8 C -0.10 -2.10 5.48 -104.47 -0.57 -2.67 16 9 C 0.18 3.81 5.22 -5.19 -0.03 3.78 16 10 N -0.59 -14.53 2.91 -182.50 -0.53 -15.06 16 11 C 0.16 3.91 8.51 59.85 0.51 4.42 16 12 C -0.25 -6.50 8.56 -15.06 -0.13 -6.63 16 13 H 0.07 1.83 7.31 -52.49 -0.38 1.44 16 14 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 15 N -0.91 -26.06 10.58 55.49 0.59 -25.47 16 16 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H 0.08 1.64 7.47 -51.93 -0.39 1.26 16 21 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 22 H 0.07 1.20 5.95 -51.93 -0.31 0.90 16 23 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 24 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 25 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 26 H 0.39 6.29 8.56 45.56 0.39 6.68 16 27 H 0.06 1.16 5.84 -51.93 -0.30 0.85 16 28 H 0.05 1.08 7.25 -51.93 -0.38 0.71 16 29 H 0.02 0.64 7.39 -51.93 -0.38 0.25 16 30 H 0.05 1.20 7.22 -51.93 -0.37 0.83 16 31 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 266.15 15.07 4.01 4.01 Total: -1.00 -29.76 266.15 -6.61 -36.37 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.36 Total: 3.96 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.05 Total: -10.92 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.06 Total: -40.53 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.24 Total: -9.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.76 -6.61 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237488486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.339 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds