Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.97273 * 2 1 4 4 C 1.38242 * 120.11151 * 180.29521 * 3 2 1 5 5 C 1.38166 * 120.05490 * 359.44943 * 4 3 2 6 6 C 1.38712 * 119.94565 * 0.27772 * 5 4 3 7 7 O 1.35902 * 120.06099 * 179.97438 * 6 5 4 8 8 C 1.38125 * 119.97194 * 179.74590 * 2 1 3 9 9 C 1.50705 * 120.02385 * 359.95858 * 8 2 1 10 10 N 1.46505 * 109.47027 * 270.01627 * 9 8 2 11 11 C 1.46498 * 120.00332 * 270.00341 * 10 9 8 12 12 C 1.36938 * 119.99442 * 90.00495 * 10 9 8 13 13 H 1.08002 * 120.00204 * 22.60775 * 12 10 9 14 14 C 1.38807 * 119.99708 * 202.60693 * 12 10 9 15 15 N 1.31617 * 120.00565 * 10.94970 * 14 12 10 16 16 Si 1.86808 * 120.00014 * 190.94736 * 14 12 10 17 17 H 1.48501 * 109.46699 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47172 * 120.00164 * 16 14 12 19 19 H 1.48500 * 109.47269 * 240.00394 * 16 14 12 20 20 H 1.08995 * 109.47163 * 270.25348 * 1 2 3 21 21 H 1.09004 * 109.46552 * 30.25469 * 1 2 3 22 22 H 1.09000 * 109.47089 * 150.25012 * 1 2 3 23 23 H 1.07999 * 119.94313 * 0.04870 * 3 2 1 24 24 H 1.07994 * 119.97482 * 179.72365 * 4 3 2 25 25 H 1.08000 * 120.03420 * 180.24842 * 5 4 3 26 26 H 0.96697 * 114.00160 * 89.99142 * 7 6 5 27 27 H 1.08997 * 109.47563 * 30.02040 * 9 8 2 28 28 H 1.09003 * 109.46668 * 150.02188 * 9 8 2 29 29 H 1.09004 * 109.46594 * 94.58411 * 11 10 9 30 30 H 1.08996 * 109.47052 * 214.58343 * 11 10 9 31 31 H 1.09000 * 109.46951 * 334.58683 * 11 10 9 32 32 H 0.96996 * 120.00696 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0062 5 6 4.2752 0.0071 -0.0008 6 6 3.5846 -1.1959 0.0049 7 8 4.2658 -2.3718 0.0096 8 6 2.1971 -1.1965 0.0053 9 6 1.4435 -2.5016 0.0120 10 7 1.1998 -2.9177 1.3955 11 6 2.1767 -3.7600 2.0900 12 6 0.0588 -2.5191 2.0393 13 1 -0.8101 -2.2279 1.4679 14 6 0.0191 -2.4894 3.4265 15 7 1.1286 -2.6327 4.1200 16 14 -1.6091 -2.2458 4.3093 17 1 -2.6988 -2.1111 3.3095 18 1 -1.8796 -3.4172 5.1810 19 1 -1.5432 -1.0160 5.1391 20 1 -0.3633 0.0045 1.0276 21 1 -0.3632 0.8878 -0.5178 22 1 -0.3633 -0.8922 -0.5099 23 1 1.6565 2.1324 0.0008 24 1 4.1176 2.1381 -0.0107 25 1 5.3552 0.0101 -0.0016 26 1 4.4636 -2.7083 0.8943 27 1 0.4909 -2.3738 -0.5021 28 1 2.0324 -3.2638 -0.4982 29 1 2.8545 -3.1305 2.6664 30 1 1.6556 -4.4427 2.7612 31 1 2.7466 -4.3336 1.3590 32 1 1.1009 -2.6116 5.0893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237488486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -17.709858 kcal Electronic energy + Delta-G solvation = -15454.147628 eV Core-core repulsion = 12993.744900 eV Total energy + Delta-G solvation = -2460.402728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82301 -37.67051 -37.29177 -33.98919 -32.76436 -31.02647 -28.13831 -27.88283 -26.87341 -23.66595 -22.64299 -21.38102 -18.86982 -18.65723 -17.06716 -16.85662 -16.69902 -15.86512 -15.39964 -15.07882 -14.71129 -14.23352 -14.15786 -13.59017 -13.42424 -13.09366 -12.85969 -12.75167 -12.52464 -12.39943 -12.19130 -12.00997 -11.88206 -11.69583 -11.21015 -10.60935 -9.42917 -9.33166 -8.74951 -7.79500 -5.25356 0.46404 0.56376 1.45355 1.47694 1.56559 2.51797 2.79268 3.36293 3.51471 3.87430 4.05611 4.12863 4.26743 4.37770 4.54752 4.76940 4.82965 4.86075 4.87309 5.06509 5.09273 5.19994 5.34086 5.43516 5.57998 5.64169 5.67832 5.72663 5.89275 6.10552 6.35360 6.85045 7.18280 7.88205 8.33838 9.24574 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.010851 C = 0.009322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.525437 B = 2579.766314 C = 3002.870592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.166 4.166 6 C 0.092 3.908 7 O -0.506 6.506 8 C -0.131 4.131 9 C 0.183 3.817 10 N -0.604 5.604 11 C 0.179 3.821 12 C -0.241 4.241 13 H 0.076 0.924 14 C -0.054 4.054 15 N -0.940 5.940 16 Si 0.959 3.041 17 H -0.263 1.263 18 H -0.295 1.295 19 H -0.296 1.296 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.142 0.858 24 H 0.152 0.848 25 H 0.138 0.862 26 H 0.393 0.607 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.003 0.997 30 H 0.018 0.982 31 H 0.029 0.971 32 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 5.676 -7.934 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.159 4.159 4 C -0.131 4.131 5 C -0.184 4.184 6 C 0.047 3.953 7 O -0.317 6.317 8 C -0.134 4.134 9 C 0.058 3.942 10 N -0.326 5.326 11 C 0.035 3.965 12 C -0.371 4.371 13 H 0.094 0.906 14 C -0.249 4.249 15 N -0.588 5.588 16 Si 0.788 3.212 17 H -0.187 1.187 18 H -0.222 1.222 19 H -0.223 1.223 20 H 0.076 0.924 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.159 0.841 24 H 0.169 0.831 25 H 0.156 0.844 26 H 0.250 0.750 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.882 5.664 -8.385 10.521 hybrid contribution -0.508 -0.118 1.578 1.662 sum 2.374 5.546 -6.806 9.095 Atomic orbital electron populations 1.20792 0.90681 1.02617 1.02005 1.19933 0.96960 0.92482 0.98038 1.21308 0.94843 0.97675 1.02108 1.21219 0.94091 0.98113 0.99726 1.21548 1.00861 0.91969 1.04027 1.18530 0.89635 0.85810 1.01364 1.84646 1.75973 1.36883 1.34194 1.21232 0.93890 0.98078 1.00235 1.19904 0.97113 0.90915 0.86274 1.44232 1.21708 1.55989 1.10692 1.20560 0.91061 0.91939 0.92972 1.19555 0.90371 1.38030 0.89184 0.90628 1.25710 0.99414 1.01964 0.97764 1.70218 1.26513 1.56894 1.05148 0.85311 0.80660 0.76551 0.78686 1.18687 1.22219 1.22340 0.92384 0.89976 0.91774 0.84056 0.83065 0.84400 0.75002 0.92038 0.92571 0.97854 0.96364 0.95230 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.56 8.63 71.24 0.62 -2.95 16 2 C -0.07 -2.71 5.88 -19.88 -0.12 -2.83 16 3 C -0.14 -4.46 9.70 22.28 0.22 -4.24 16 4 C -0.11 -3.31 10.04 22.25 0.22 -3.09 16 5 C -0.17 -5.36 9.99 22.37 0.22 -5.14 16 6 C 0.09 3.46 6.68 22.51 0.15 3.61 16 7 O -0.51 -18.05 12.55 -92.44 -1.16 -19.21 16 8 C -0.13 -5.28 5.48 -19.77 -0.11 -5.38 16 9 C 0.18 7.73 5.22 85.63 0.45 8.18 16 10 N -0.60 -29.85 2.91 -731.29 -2.13 -31.97 16 11 C 0.18 8.75 8.51 127.77 1.09 9.84 16 12 C -0.24 -12.78 8.56 84.03 0.72 -12.06 16 13 H 0.08 3.86 7.31 -2.91 -0.02 3.84 16 14 C -0.05 -2.98 5.14 84.86 0.44 -2.55 16 15 N -0.94 -55.17 10.58 21.65 0.23 -54.94 16 16 Si 0.96 44.67 29.57 68.60 2.03 46.70 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H 0.06 2.26 7.47 -2.39 -0.02 2.24 16 21 H 0.08 2.20 8.09 -2.38 -0.02 2.18 16 22 H 0.06 2.19 5.95 -2.39 -0.01 2.17 16 23 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 24 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 25 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 26 H 0.39 12.63 8.56 -74.06 -0.63 12.00 16 27 H 0.06 2.48 5.84 -2.39 -0.01 2.47 16 28 H 0.06 2.28 7.25 -2.39 -0.02 2.26 16 29 H 0.00 0.17 7.39 -2.38 -0.02 0.15 16 30 H 0.02 0.95 7.22 -2.39 -0.02 0.93 16 31 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 32 H 0.24 14.07 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -63.24 266.15 3.35 -59.89 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.49 Total: 16.16 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.89 Total: -16.62 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.90 Total: -86.92 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.16 Total: -19.21 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.24 3.35 -59.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237488486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.176 kcal (2) G-P(sol) polarization free energy of solvation -63.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds