Wall clock time and date at job start Sun Mar 29 2020 21:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38289 * 119.94129 * 2 1 4 4 C 1.38116 * 120.05121 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94971 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05984 * 180.02562 * 5 4 3 7 7 C 1.38713 * 119.88682 * 0.02562 * 5 4 3 8 8 C 1.38168 * 119.94032 * 359.70257 * 7 5 4 9 9 C 1.50707 * 119.96944 * 180.31682 * 8 7 5 10 10 N 1.46498 * 109.47209 * 260.25091 * 9 8 7 11 11 C 1.46501 * 119.99999 * 270.00145 * 10 9 8 12 12 C 1.36938 * 119.99704 * 90.00317 * 10 9 8 13 13 H 1.07996 * 120.00431 * 20.38923 * 12 10 9 14 14 C 1.38816 * 119.99525 * 200.39240 * 12 10 9 15 15 N 1.31612 * 120.00196 * 14.98916 * 14 12 10 16 16 Si 1.86800 * 119.99619 * 194.98758 * 14 12 10 17 17 H 1.48503 * 109.47090 * 85.00136 * 16 14 12 18 18 H 1.48502 * 109.47239 * 205.00073 * 16 14 12 19 19 H 1.48499 * 109.47167 * 325.00494 * 16 14 12 20 20 H 1.08999 * 109.46934 * 89.99913 * 1 2 3 21 21 H 1.08991 * 109.47504 * 329.99856 * 1 2 3 22 22 H 1.09002 * 109.46564 * 209.99465 * 1 2 3 23 23 H 1.08002 * 119.97210 * 0.02562 * 3 2 1 24 24 H 1.08008 * 120.02431 * 180.02562 * 4 3 2 25 25 H 0.96704 * 114.00052 * 89.99831 * 6 5 4 26 26 H 1.07999 * 120.02519 * 179.97438 * 7 5 4 27 27 H 1.09001 * 109.46981 * 20.25663 * 9 8 7 28 28 H 1.08997 * 109.46719 * 140.25032 * 9 8 7 29 29 H 1.09002 * 109.47058 * 95.11354 * 11 10 9 30 30 H 1.08999 * 109.46813 * 215.11155 * 11 10 9 31 31 H 1.09000 * 109.47145 * 335.11624 * 11 10 9 32 32 H 0.97004 * 120.00192 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.2735 0.0001 0.0005 6 8 5.6324 0.0001 0.0016 7 6 3.5788 -1.2006 -0.0005 8 6 2.1971 -1.1978 0.0046 9 6 1.4417 -2.5019 0.0107 10 7 0.9895 -2.8106 -1.3481 11 6 -0.3178 -2.3377 -1.8102 12 6 1.7888 -3.5413 -2.1863 13 1 2.5741 -4.1610 -1.7794 14 6 1.5895 -3.4854 -3.5589 15 7 0.8497 -2.5287 -4.0781 16 14 2.3713 -4.7683 -4.6691 17 1 1.4961 -5.9662 -4.7342 18 1 2.5419 -4.2052 -6.0326 19 1 3.6975 -5.1534 -4.1231 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 0.8899 0.5138 22 1 -0.3632 -0.8901 0.5138 23 1 1.6559 2.1328 0.0004 24 1 4.1171 2.1372 0.0010 25 1 6.0251 -0.0003 0.8853 26 1 4.1175 -2.1366 -0.0010 27 1 2.0952 -3.2987 0.3660 28 1 0.5784 -2.4186 0.6708 29 1 -0.1950 -1.3966 -2.3463 30 1 -0.7583 -3.0801 -2.4757 31 1 -0.9727 -2.1844 -0.9525 32 1 0.7107 -2.4894 -5.0373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238105390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:40 Heat of formation + Delta-G solvation = 2.459610 kcal Electronic energy + Delta-G solvation = -15180.955104 eV Core-core repulsion = 12721.426990 eV Total energy + Delta-G solvation = -2459.528114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.36232 -36.94629 -35.15534 -31.94305 -31.22731 -30.03359 -26.81536 -25.61215 -25.04016 -22.05859 -21.32239 -19.99405 -17.57932 -16.63912 -15.41420 -15.33365 -14.83914 -14.46330 -13.94887 -13.41415 -13.24367 -12.87611 -12.46106 -12.35648 -11.79403 -11.38763 -11.13657 -10.94145 -10.89601 -10.82025 -10.42924 -10.25984 -10.06536 -9.88855 -9.77630 -8.53035 -8.22488 -7.80387 -6.77808 -5.72711 -3.14424 1.82084 1.95951 3.40351 3.46144 3.47505 4.17118 4.52857 4.64530 5.33864 5.40755 5.50795 5.59260 5.71313 5.78425 5.92579 6.04962 6.18485 6.27052 6.40775 6.53612 6.62541 6.66578 6.78064 6.91158 7.01701 7.33467 7.37357 7.44542 7.72571 7.82122 8.07648 8.37975 9.22755 9.85514 10.33301 11.32216 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.010110 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.336716 B = 2768.995080 C = 3353.529633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.082 4.082 3 C -0.112 4.112 4 C -0.161 4.161 5 C 0.087 3.913 6 O -0.502 6.502 7 C -0.127 4.127 8 C -0.064 4.064 9 C 0.178 3.822 10 N -0.588 5.588 11 C 0.161 3.839 12 C -0.253 4.253 13 H 0.070 0.930 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.905 3.095 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.280 1.280 20 H 0.079 0.921 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.379 0.621 26 H 0.121 0.879 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.002 0.998 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 5.090 10.111 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.180 4.180 5 C 0.044 3.956 6 O -0.311 6.311 7 C -0.147 4.147 8 C -0.068 4.068 9 C 0.051 3.949 10 N -0.309 5.309 11 C 0.016 3.984 12 C -0.382 4.382 13 H 0.088 0.912 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.735 3.265 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.205 1.205 20 H 0.098 0.902 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.233 0.767 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.020 0.980 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.372 5.073 9.285 10.669 hybrid contribution 0.739 -0.405 -0.470 0.965 sum 2.111 4.667 8.815 10.195 Atomic orbital electron populations 1.20999 0.91665 1.01421 1.03031 1.19717 0.96039 0.92497 1.00071 1.20756 0.93419 0.97348 1.01488 1.21120 0.94512 0.97072 1.05319 1.18449 0.82115 0.92635 1.02450 1.84857 1.16890 1.96663 1.32673 1.21222 0.94273 0.97154 1.02038 1.20938 0.93319 0.97466 0.95100 1.20002 0.95637 0.90620 0.88614 1.44127 1.15925 1.60769 1.10093 1.20999 0.84018 0.99274 0.94060 1.19231 1.13862 1.17766 0.87384 0.91204 1.24995 0.99893 0.97823 0.96907 1.70078 1.42554 1.31117 1.11055 0.86259 0.79024 0.81139 0.80072 1.21420 1.21748 1.20510 0.90201 0.92987 0.91399 0.86642 0.86608 0.76710 0.86118 0.92931 0.92955 0.94944 0.93937 0.97958 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 8.13 36.01 0.29 -1.61 16 2 C -0.08 -1.54 5.88 -104.60 -0.62 -2.16 16 3 C -0.11 -1.91 9.69 -39.61 -0.38 -2.30 16 4 C -0.16 -2.74 9.99 -39.44 -0.39 -3.14 16 5 C 0.09 1.59 6.70 -39.22 -0.26 1.33 16 6 O -0.50 -8.08 13.50 -19.42 -0.26 -8.34 16 7 C -0.13 -2.52 9.61 -39.43 -0.38 -2.89 16 8 C -0.06 -1.30 5.46 -104.64 -0.57 -1.87 16 9 C 0.18 3.69 5.37 -5.19 -0.03 3.67 16 10 N -0.59 -14.75 2.91 -182.50 -0.53 -15.29 16 11 C 0.16 3.89 7.24 59.85 0.43 4.33 16 12 C -0.25 -7.02 9.68 -15.06 -0.15 -7.16 16 13 H 0.07 1.90 7.86 -52.49 -0.41 1.49 16 14 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 15 N -0.90 -26.71 10.67 55.49 0.59 -26.12 16 16 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H 0.08 1.47 6.15 -51.93 -0.32 1.15 16 21 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 22 H 0.07 1.09 5.18 -51.93 -0.27 0.82 16 23 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 24 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 25 H 0.38 3.88 9.06 45.56 0.41 4.29 16 26 H 0.12 2.33 8.04 -52.49 -0.42 1.91 16 27 H 0.05 1.05 7.89 -51.93 -0.41 0.64 16 28 H 0.05 0.96 6.12 -51.93 -0.32 0.65 16 29 H 0.03 0.85 6.21 -51.93 -0.32 0.53 16 30 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 31 H 0.00 0.04 6.43 -51.93 -0.33 -0.29 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 263.47 15.07 3.97 3.97 Total: -1.00 -31.94 263.47 -6.57 -38.51 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -3.17 Total: 1.78 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.14 Total: -11.83 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.06 Total: -41.40 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.26 Total: -8.34 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.94 -6.57 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238105390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds