Wall clock time and date at job start Sun Mar 29 2020 21:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38289 * 119.94129 * 2 1 4 4 C 1.38116 * 120.05121 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.94971 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05984 * 180.02562 * 5 4 3 7 7 C 1.38713 * 119.88682 * 0.02562 * 5 4 3 8 8 C 1.38168 * 119.94032 * 359.70257 * 7 5 4 9 9 C 1.50707 * 119.96944 * 180.31682 * 8 7 5 10 10 N 1.46498 * 109.47209 * 260.25091 * 9 8 7 11 11 C 1.46501 * 119.99999 * 270.00145 * 10 9 8 12 12 C 1.36938 * 119.99704 * 90.00317 * 10 9 8 13 13 H 1.07996 * 120.00431 * 20.38923 * 12 10 9 14 14 C 1.38816 * 119.99525 * 200.39240 * 12 10 9 15 15 N 1.31612 * 120.00196 * 14.98916 * 14 12 10 16 16 Si 1.86800 * 119.99619 * 194.98758 * 14 12 10 17 17 H 1.48503 * 109.47090 * 85.00136 * 16 14 12 18 18 H 1.48502 * 109.47239 * 205.00073 * 16 14 12 19 19 H 1.48499 * 109.47167 * 325.00494 * 16 14 12 20 20 H 1.08999 * 109.46934 * 89.99913 * 1 2 3 21 21 H 1.08991 * 109.47504 * 329.99856 * 1 2 3 22 22 H 1.09002 * 109.46564 * 209.99465 * 1 2 3 23 23 H 1.08002 * 119.97210 * 0.02562 * 3 2 1 24 24 H 1.08008 * 120.02431 * 180.02562 * 4 3 2 25 25 H 0.96704 * 114.00052 * 89.99831 * 6 5 4 26 26 H 1.07999 * 120.02519 * 179.97438 * 7 5 4 27 27 H 1.09001 * 109.46981 * 20.25663 * 9 8 7 28 28 H 1.08997 * 109.46719 * 140.25032 * 9 8 7 29 29 H 1.09002 * 109.47058 * 95.11354 * 11 10 9 30 30 H 1.08999 * 109.46813 * 215.11155 * 11 10 9 31 31 H 1.09000 * 109.47145 * 335.11624 * 11 10 9 32 32 H 0.97004 * 120.00192 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.2735 0.0001 0.0005 6 8 5.6324 0.0001 0.0016 7 6 3.5788 -1.2006 -0.0005 8 6 2.1971 -1.1978 0.0046 9 6 1.4417 -2.5019 0.0107 10 7 0.9895 -2.8106 -1.3481 11 6 -0.3178 -2.3377 -1.8102 12 6 1.7888 -3.5413 -2.1863 13 1 2.5741 -4.1610 -1.7794 14 6 1.5895 -3.4854 -3.5589 15 7 0.8497 -2.5287 -4.0781 16 14 2.3713 -4.7683 -4.6691 17 1 1.4961 -5.9662 -4.7342 18 1 2.5419 -4.2052 -6.0326 19 1 3.6975 -5.1534 -4.1231 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 0.8899 0.5138 22 1 -0.3632 -0.8901 0.5138 23 1 1.6559 2.1328 0.0004 24 1 4.1171 2.1372 0.0010 25 1 6.0251 -0.0003 0.8853 26 1 4.1175 -2.1366 -0.0010 27 1 2.0952 -3.2987 0.3660 28 1 0.5784 -2.4186 0.6708 29 1 -0.1950 -1.3966 -2.3463 30 1 -0.7583 -3.0801 -2.4757 31 1 -0.9727 -2.1844 -0.9525 32 1 0.7107 -2.4894 -5.0373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238105390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:40 Heat of formation + Delta-G solvation = -18.732681 kcal Electronic energy + Delta-G solvation = -15181.874071 eV Core-core repulsion = 12721.426990 eV Total energy + Delta-G solvation = -2460.447081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75864 -38.38665 -36.90125 -33.75287 -32.61164 -31.75924 -28.46021 -27.56206 -26.50481 -23.79670 -22.81896 -21.51356 -19.04776 -18.55582 -16.97421 -16.80455 -16.53596 -15.89419 -15.67882 -15.27068 -14.82507 -14.38353 -13.95600 -13.76192 -13.55704 -13.03118 -12.78567 -12.62909 -12.53275 -12.46915 -12.16120 -12.00750 -11.92982 -11.68447 -11.29128 -10.62267 -9.67147 -9.21968 -8.77768 -7.83678 -5.27686 0.43442 0.53928 1.44412 1.45207 1.53109 2.49567 2.80448 3.29092 3.38675 3.87927 4.02254 4.10529 4.21586 4.38729 4.49221 4.69516 4.81001 4.86432 4.92088 5.01578 5.04019 5.22898 5.32404 5.39185 5.52843 5.59983 5.63215 5.77852 5.91631 6.10874 6.31273 6.94027 7.14898 7.86717 8.28518 9.19338 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.010110 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.336716 B = 2768.995080 C = 3353.529633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.160 4.160 5 C 0.085 3.915 6 O -0.511 6.511 7 C -0.151 4.151 8 C -0.085 4.085 9 C 0.178 3.822 10 N -0.605 5.605 11 C 0.178 3.822 12 C -0.258 4.258 13 H 0.069 0.931 14 C -0.053 4.053 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.282 1.282 18 H -0.297 1.297 19 H -0.273 1.273 20 H 0.058 0.942 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.147 0.853 24 H 0.144 0.856 25 H 0.405 0.595 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.039 0.961 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 6.102 11.285 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.178 4.178 5 C 0.040 3.960 6 O -0.323 6.323 7 C -0.170 4.170 8 C -0.089 4.089 9 C 0.053 3.947 10 N -0.326 5.326 11 C 0.034 3.966 12 C -0.388 4.388 13 H 0.086 0.914 14 C -0.248 4.248 15 N -0.581 5.581 16 Si 0.792 3.208 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.198 1.198 20 H 0.077 0.923 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.165 0.835 24 H 0.162 0.838 25 H 0.263 0.737 26 H 0.131 0.869 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.837 6.085 10.522 12.293 hybrid contribution 0.685 -0.647 -0.676 1.160 sum 2.523 5.438 9.846 11.527 Atomic orbital electron populations 1.20953 0.90336 1.03206 1.02098 1.20051 0.97268 0.92604 1.00007 1.21155 0.93733 0.98042 0.99984 1.21486 0.94789 0.97731 1.03818 1.18548 0.82968 0.92544 1.01896 1.84782 1.15871 1.96568 1.35119 1.21340 0.94517 0.97787 1.03377 1.20867 0.93634 0.97611 0.96749 1.20083 0.96743 0.91237 0.86678 1.44260 1.16120 1.61249 1.11007 1.20734 0.84389 0.96883 0.94612 1.19504 1.13458 1.17855 0.88003 0.91358 1.25696 1.01142 0.99716 0.98243 1.70238 1.44438 1.32769 1.10687 0.85328 0.78489 0.79015 0.77920 1.20845 1.22376 1.19788 0.92296 0.89727 0.91176 0.83518 0.83808 0.73680 0.86904 0.92897 0.90543 0.97426 0.97007 0.94290 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.39 8.13 71.24 0.58 -2.81 16 2 C -0.10 -3.50 5.88 -19.85 -0.12 -3.62 16 3 C -0.11 -3.47 9.69 22.25 0.22 -3.26 16 4 C -0.16 -4.96 9.99 22.36 0.22 -4.74 16 5 C 0.08 2.93 6.70 22.51 0.15 3.08 16 6 O -0.51 -15.36 13.50 -92.39 -1.25 -16.61 16 7 C -0.15 -5.87 9.61 22.37 0.21 -5.66 16 8 C -0.09 -3.39 5.46 -19.88 -0.11 -3.49 16 9 C 0.18 7.27 5.37 85.64 0.46 7.73 16 10 N -0.60 -30.38 2.91 -731.30 -2.13 -32.51 16 11 C 0.18 8.69 7.24 127.77 0.93 9.61 16 12 C -0.26 -14.44 9.68 84.03 0.81 -13.63 16 13 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 14 C -0.05 -3.03 5.06 84.86 0.43 -2.61 16 15 N -0.93 -56.48 10.67 21.65 0.23 -56.25 16 16 Si 0.96 46.52 29.58 68.60 2.03 48.55 16 17 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 20 H 0.06 2.10 6.15 -2.39 -0.01 2.08 16 21 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 22 H 0.07 2.08 5.18 -2.39 -0.01 2.07 16 23 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 24 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 25 H 0.41 7.29 9.06 -74.05 -0.67 6.62 16 26 H 0.11 4.41 8.04 -2.91 -0.02 4.39 16 27 H 0.05 2.11 7.89 -2.39 -0.02 2.09 16 28 H 0.08 2.69 6.12 -2.39 -0.01 2.68 16 29 H 0.01 0.40 6.21 -2.39 -0.01 0.39 16 30 H 0.01 0.61 7.22 -2.39 -0.02 0.59 16 31 H 0.04 1.56 6.43 -2.39 -0.02 1.55 16 32 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -68.51 263.47 3.13 -65.38 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.46 Total: 10.83 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 3.79 Total: -19.38 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -1.90 Total: -88.76 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.25 Total: -16.61 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -68.51 3.13 -65.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238105390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.644 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds