Wall clock time and date at job start Sun Mar 29 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32351 * 120.45356 * 2 1 4 4 C 1.31779 * 120.82101 * 180.02562 * 3 2 1 5 5 N 1.31802 * 121.75915 * 0.02562 * 4 3 2 6 6 C 1.32326 * 120.81786 * 359.97438 * 5 4 3 7 7 C 1.38580 * 120.44508 * 180.02562 * 2 1 3 8 8 C 1.50697 * 120.79971 * 359.70718 * 7 2 1 9 9 N 1.46897 * 109.46966 * 285.75906 * 8 7 2 10 10 C 1.46906 * 111.00212 * 288.34335 * 9 8 7 11 11 C 1.46907 * 111.00141 * 164.39222 * 9 8 7 12 12 C 1.50699 * 109.47206 * 190.00222 * 11 9 8 13 13 H 1.07998 * 119.99753 * 359.97438 * 12 11 9 14 14 C 1.37872 * 119.99636 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00428 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47379 * 59.99570 * 16 14 12 18 18 H 1.48507 * 109.47194 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47136 * 299.99383 * 16 14 12 20 20 H 1.08998 * 109.47102 * 264.63844 * 1 2 3 21 21 H 1.09002 * 109.47131 * 24.63806 * 1 2 3 22 22 H 1.09000 * 109.46959 * 144.63646 * 1 2 3 23 23 H 1.07999 * 119.11954 * 179.97438 * 4 3 2 24 24 H 1.07996 * 120.45131 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.47473 * 45.76034 * 8 7 2 26 26 H 1.09006 * 109.47263 * 165.76350 * 8 7 2 27 27 H 1.09001 * 109.46342 * 58.28942 * 10 9 8 28 28 H 1.09004 * 109.46842 * 178.28315 * 10 9 8 29 29 H 1.08992 * 109.47086 * 298.29097 * 10 9 8 30 30 H 1.08999 * 109.46805 * 310.00398 * 11 9 8 31 31 H 1.09005 * 109.46981 * 69.99830 * 11 9 8 32 32 H 0.97001 * 120.00227 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1778 1.1409 0.0000 4 6 3.4955 1.1494 -0.0005 5 7 4.1964 0.0332 -0.0015 6 6 3.5946 -1.1453 -0.0016 7 6 2.2092 -1.1947 -0.0005 8 6 1.4842 -2.5158 0.0055 9 7 0.9248 -2.7613 1.3414 10 6 1.9863 -3.0754 2.3072 11 6 -0.0836 -3.8288 1.3019 12 6 -0.8064 -3.8862 2.6231 13 1 -0.5427 -3.1988 3.4131 14 6 -1.8035 -4.8171 2.8234 15 7 -2.1242 -5.6546 1.8614 16 14 -2.6999 -4.8878 4.4607 17 1 -3.3676 -3.5863 4.7162 18 1 -3.7184 -5.9679 4.4213 19 1 -1.7260 -5.1662 5.5467 20 1 -0.3633 -0.0960 1.0232 21 1 -0.3633 0.9341 -0.4284 22 1 -0.3633 -0.8381 -0.5948 23 1 4.0150 2.0962 -0.0009 24 1 4.1747 -2.0562 -0.0020 25 1 0.6776 -2.4911 -0.7272 26 1 2.1816 -3.3142 -0.2486 27 1 2.6982 -2.2508 2.3454 28 1 1.5476 -3.2226 3.2941 29 1 2.5006 -3.9854 1.9986 30 1 -0.7986 -3.6239 0.5052 31 1 0.4060 -4.7844 1.1138 32 1 -2.8260 -6.3093 2.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238169636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:54 Heat of formation + Delta-G solvation = 26.978467 kcal Electronic energy + Delta-G solvation = -14820.200086 eV Core-core repulsion = 12394.027941 eV Total energy + Delta-G solvation = -2426.172146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05385 -38.40771 -35.35697 -34.88163 -33.58108 -29.97615 -29.00164 -28.32329 -26.00899 -24.11426 -23.52169 -21.87194 -18.70409 -18.50632 -17.67770 -16.92298 -16.28148 -15.84880 -15.77621 -15.40611 -14.63355 -14.33482 -14.00897 -13.85155 -13.76824 -13.35406 -13.17243 -12.89076 -12.62354 -12.59123 -12.34521 -12.04044 -11.68352 -11.44208 -11.26001 -10.59373 -10.27136 -10.17190 -9.04140 -8.18350 -6.27297 -0.04114 0.10477 1.43362 1.44958 1.52904 2.41656 2.77257 3.14854 3.17332 3.28300 3.41483 3.61805 3.81611 3.98710 4.40713 4.47151 4.55528 4.63285 4.67817 4.74303 4.85806 5.01809 5.08776 5.18934 5.21801 5.31942 5.53453 5.66196 6.03182 6.06356 6.29298 6.59656 6.88078 7.13753 7.42168 8.92037 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047047 B = 0.006512 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.005115 B = 4298.592233 C = 4428.387813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.187 3.813 3 N -0.541 5.541 4 C 0.283 3.717 5 N -0.539 5.539 6 C 0.151 3.849 7 C -0.179 4.179 8 C 0.102 3.898 9 N -0.539 5.539 10 C 0.044 3.956 11 C 0.209 3.791 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.271 1.271 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.224 0.776 24 H 0.184 0.816 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.013 0.987 31 H -0.033 1.033 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 9.065 -3.767 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 N -0.256 5.256 4 C -0.005 4.005 5 N -0.253 5.253 6 C -0.015 4.015 7 C -0.183 4.183 8 C -0.027 4.027 9 N -0.263 5.263 10 C -0.104 4.104 11 C 0.084 3.916 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.196 1.196 20 H 0.100 0.900 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.240 0.760 24 H 0.200 0.800 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.031 0.969 31 H -0.015 1.015 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.741 10.216 -3.654 13.933 hybrid contribution -0.620 -1.911 0.456 2.061 sum 8.120 8.305 -3.198 12.047 Atomic orbital electron populations 1.20698 0.87178 1.03581 1.03860 1.21812 0.98294 0.87713 0.88077 1.68339 1.11055 1.30429 1.15731 1.25522 0.86708 0.97955 0.90283 1.68466 1.42004 0.99425 1.15452 1.23463 0.91341 0.96987 0.89682 1.21463 0.96012 0.97207 1.03651 1.20842 0.97825 0.91874 0.92172 1.62002 1.13457 1.44927 1.05866 1.22150 0.93171 0.98168 0.96940 1.19405 0.89234 0.86392 0.96612 1.21409 1.18353 1.16491 0.99764 0.92152 1.25800 0.97877 0.95139 1.00418 1.70055 1.31860 1.20906 1.34435 0.85537 0.78213 0.77822 0.79639 1.19474 1.20970 1.19563 0.90032 0.89661 0.90120 0.75978 0.79952 0.89871 0.93160 0.92098 0.92478 0.96190 0.96899 1.01537 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.75 9.66 71.23 0.69 -2.06 16 2 C 0.19 5.62 6.82 42.56 0.29 5.91 16 3 N -0.54 -15.61 10.38 -188.09 -1.95 -17.56 16 4 C 0.28 7.06 12.28 180.89 2.22 9.28 16 5 N -0.54 -14.30 10.44 -200.04 -2.09 -16.39 16 6 C 0.15 3.95 10.51 84.71 0.89 4.84 16 7 C -0.18 -5.23 4.67 -19.69 -0.09 -5.32 16 8 C 0.10 3.29 4.49 85.56 0.38 3.67 16 9 N -0.54 -21.49 4.63 -931.62 -4.31 -25.81 16 10 C 0.04 1.62 9.20 127.69 1.17 2.80 16 11 C 0.21 10.44 4.71 85.56 0.40 10.84 16 12 C -0.52 -28.36 8.48 25.60 0.22 -28.14 16 13 H 0.06 3.24 7.11 -2.91 -0.02 3.22 16 14 C 0.01 0.33 5.46 84.65 0.46 0.79 16 15 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 16 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 21 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.08 2.31 6.61 -2.39 -0.02 2.29 16 23 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 24 H 0.18 3.84 8.05 -2.91 -0.02 3.82 16 25 H 0.08 2.69 6.54 -2.39 -0.02 2.68 16 26 H 0.05 1.51 7.92 -2.38 -0.02 1.49 16 27 H 0.06 1.97 7.06 -2.39 -0.02 1.96 16 28 H 0.06 2.30 6.80 -2.39 -0.02 2.29 16 29 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.01 0.68 7.86 -2.39 -0.02 0.67 16 31 H -0.03 -1.79 8.12 -2.38 -0.02 -1.81 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -62.05 272.74 1.70 -60.35 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.10 Total: 5.53 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.64 Total: 2.61 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -8.07 Total: -113.78 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.05 1.70 -60.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238169636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.329 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds