Wall clock time and date at job start Sun Mar 29 2020 21:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47032 * 2 1 4 4 O 1.42899 * 109.46726 * 240.00597 * 2 1 3 5 5 C 1.50697 * 109.46981 * 119.99988 * 2 1 3 6 6 C 1.38220 * 120.42362 * 330.02264 * 5 2 1 7 7 N 1.31857 * 120.76526 * 179.97438 * 6 5 2 8 8 C 1.31883 * 121.72511 * 359.70371 * 7 6 5 9 9 C 1.38182 * 120.76258 * 0.58630 * 8 7 6 10 10 C 1.50703 * 120.41811 * 179.70093 * 9 8 7 11 11 C 1.50701 * 109.47151 * 269.72719 * 10 9 8 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.38627 * 120.41665 * 149.99784 * 5 2 1 20 20 H 1.09004 * 109.46812 * 299.99958 * 1 2 3 21 21 H 1.08998 * 109.46838 * 59.99843 * 1 2 3 22 22 H 1.08998 * 109.46860 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47363 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47506 * 300.00457 * 3 2 1 25 25 H 1.09005 * 109.47009 * 59.99864 * 3 2 1 26 26 H 0.96691 * 114.00682 * 59.99457 * 4 2 1 27 27 H 1.08007 * 119.61489 * 359.95867 * 6 5 2 28 28 H 1.07999 * 119.61455 * 180.30985 * 8 7 6 29 29 H 1.09000 * 109.47088 * 149.71858 * 10 9 8 30 30 H 1.09007 * 109.46560 * 29.72363 * 10 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.08008 * 120.78914 * 0.05098 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0324 -0.7104 1.2304 6 6 1.2923 -0.6967 2.3977 7 7 1.7251 -1.3164 3.4781 8 6 2.8682 -1.9740 3.4893 9 6 3.6646 -2.0262 2.3613 10 6 4.9727 -2.7743 2.3848 11 6 6.0784 -1.8399 2.8035 12 1 5.8561 -0.8074 3.0295 13 6 7.3745 -2.3015 2.8919 14 7 7.6451 -3.5586 2.6163 15 14 8.7463 -1.1412 3.4033 16 1 8.4626 -0.6065 4.7593 17 1 10.0359 -1.8773 3.4217 18 1 8.8309 -0.0178 2.4358 19 6 3.2424 -1.3864 1.2058 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.7210 -0.2701 -1.9980 27 1 0.3486 -0.1720 2.4252 28 1 3.1876 -2.4737 4.3919 29 1 5.1850 -3.1661 1.3900 30 1 4.9065 -3.5996 3.0938 31 1 8.5570 -3.8832 2.6781 32 1 3.8422 -1.4138 0.3080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054381.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:03 Heat of formation + Delta-G solvation = -34.802737 kcal Electronic energy + Delta-G solvation = -14740.124934 eV Core-core repulsion = 12278.981002 eV Total energy + Delta-G solvation = -2461.143931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.95107 -37.64260 -33.85279 -32.81524 -31.82019 -29.82192 -27.66450 -26.98947 -23.85347 -23.06607 -21.80264 -19.49059 -16.72722 -16.55776 -16.30900 -15.46855 -15.21275 -14.57482 -14.23144 -13.49900 -13.19603 -12.83556 -12.42757 -12.31016 -12.15512 -11.94610 -11.69995 -11.66524 -11.34037 -10.99852 -10.71465 -10.48551 -10.14386 -9.80626 -9.61430 -8.87803 -8.75399 -8.43786 -8.02929 -6.07633 -4.12169 1.73020 2.03484 3.30370 3.34516 3.37678 4.19258 4.37099 4.51985 4.72053 4.87398 5.04666 5.12114 5.27315 5.43620 5.57536 5.61620 5.68500 5.81703 5.87262 5.95356 6.03666 6.22256 6.28569 6.50893 6.87354 6.94631 7.37318 7.51946 7.65500 7.73772 7.87220 8.25673 8.58789 8.92149 9.51951 11.02322 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.007212 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.969720 B = 3881.537190 C = 4158.282942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.176 3.824 3 C -0.173 4.173 4 O -0.553 6.553 5 C -0.135 4.135 6 C 0.069 3.931 7 N -0.488 5.488 8 C 0.086 3.914 9 C -0.082 4.082 10 C 0.052 3.948 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.057 4.057 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.373 0.627 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 7.457 -5.738 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.134 3.866 3 C -0.231 4.231 4 O -0.358 6.358 5 C -0.137 4.137 6 C -0.088 4.088 7 N -0.196 5.196 8 C -0.070 4.070 9 C -0.084 4.084 10 C 0.015 3.985 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.083 4.083 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.220 0.780 27 H 0.161 0.839 28 H 0.169 0.831 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.173 6.958 -4.515 14.730 hybrid contribution 1.112 0.984 -0.924 1.749 sum -11.060 7.942 -5.439 14.663 Atomic orbital electron populations 1.22536 0.95430 1.02983 1.02391 1.19743 0.92053 0.90552 0.84211 1.22476 1.02893 0.95488 1.02204 1.86642 1.77101 1.56823 1.15266 1.20402 0.96884 1.01512 0.94924 1.22288 0.99198 0.98931 0.88411 1.67620 1.15429 1.08127 1.28425 1.22679 0.89690 0.96438 0.98221 1.21705 0.98006 0.96003 0.92706 1.18300 0.86713 0.94820 0.98662 1.20981 0.91567 0.96247 1.46542 0.92613 1.24993 0.98721 0.95206 0.95217 1.69940 1.20293 1.14281 1.48595 0.86586 0.80999 0.80787 0.79262 1.20099 1.21129 1.20188 1.21343 0.94201 0.94184 0.98593 0.91193 0.92227 0.91534 0.91341 0.92274 0.91476 0.77991 0.83937 0.83085 0.95019 0.94919 0.92674 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.13 37.16 0.30 -1.51 16 2 C 0.18 2.31 1.24 -91.77 -0.11 2.20 16 3 C -0.17 -2.01 8.80 37.16 0.33 -1.69 16 4 O -0.55 -7.47 12.03 -35.23 -0.42 -7.89 16 5 C -0.14 -2.32 4.85 -104.49 -0.51 -2.83 16 6 C 0.07 1.18 10.31 -17.55 -0.18 1.00 16 7 N -0.49 -9.51 10.36 -13.25 -0.14 -9.65 16 8 C 0.09 1.79 10.86 -17.55 -0.19 1.60 16 9 C -0.08 -1.84 5.09 -104.48 -0.53 -2.37 16 10 C 0.05 1.36 5.13 -29.03 -0.15 1.21 16 11 C -0.52 -14.44 9.09 -34.44 -0.31 -14.75 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.06 -1.17 9.15 -39.28 -0.36 -1.53 16 20 H 0.07 0.65 6.54 -51.93 -0.34 0.31 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.37 3.18 9.04 45.56 0.41 3.60 16 27 H 0.14 1.94 6.19 -52.48 -0.32 1.62 16 28 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 29 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 2.77 7.57 -52.48 -0.40 2.37 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -31.26 275.00 -6.08 -37.34 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.57 Total: 2.15 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.81 Total: -17.06 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.60 Total: -35.20 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.42 Total: -7.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.26 -6.08 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054381.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.539 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds