Wall clock time and date at job start Sun Mar 29 2020 21:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47032 * 2 1 4 4 O 1.42899 * 109.46726 * 240.00597 * 2 1 3 5 5 C 1.50697 * 109.46981 * 119.99988 * 2 1 3 6 6 C 1.38220 * 120.42362 * 330.02264 * 5 2 1 7 7 N 1.31857 * 120.76526 * 179.97438 * 6 5 2 8 8 C 1.31883 * 121.72511 * 359.70371 * 7 6 5 9 9 C 1.38182 * 120.76258 * 0.58630 * 8 7 6 10 10 C 1.50703 * 120.41811 * 179.70093 * 9 8 7 11 11 C 1.50701 * 109.47151 * 269.72719 * 10 9 8 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.38627 * 120.41665 * 149.99784 * 5 2 1 20 20 H 1.09004 * 109.46812 * 299.99958 * 1 2 3 21 21 H 1.08998 * 109.46838 * 59.99843 * 1 2 3 22 22 H 1.08998 * 109.46860 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47363 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47506 * 300.00457 * 3 2 1 25 25 H 1.09005 * 109.47009 * 59.99864 * 3 2 1 26 26 H 0.96691 * 114.00682 * 59.99457 * 4 2 1 27 27 H 1.08007 * 119.61489 * 359.95867 * 6 5 2 28 28 H 1.07999 * 119.61455 * 180.30985 * 8 7 6 29 29 H 1.09000 * 109.47088 * 149.71858 * 10 9 8 30 30 H 1.09007 * 109.46560 * 29.72363 * 10 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.08008 * 120.78914 * 0.05098 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0324 -0.7104 1.2304 6 6 1.2923 -0.6967 2.3977 7 7 1.7251 -1.3164 3.4781 8 6 2.8682 -1.9740 3.4893 9 6 3.6646 -2.0262 2.3613 10 6 4.9727 -2.7743 2.3848 11 6 6.0784 -1.8399 2.8035 12 1 5.8561 -0.8074 3.0295 13 6 7.3745 -2.3015 2.8919 14 7 7.6451 -3.5586 2.6163 15 14 8.7463 -1.1412 3.4033 16 1 8.4626 -0.6065 4.7593 17 1 10.0359 -1.8773 3.4217 18 1 8.8309 -0.0178 2.4358 19 6 3.2424 -1.3864 1.2058 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.7210 -0.2701 -1.9980 27 1 0.3486 -0.1720 2.4252 28 1 3.1876 -2.4737 4.3919 29 1 5.1850 -3.1661 1.3900 30 1 4.9065 -3.5996 3.0938 31 1 8.5570 -3.8832 2.6781 32 1 3.8422 -1.4138 0.3080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054381.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:02 Heat of formation + Delta-G solvation = -56.594836 kcal Electronic energy + Delta-G solvation = -14741.069910 eV Core-core repulsion = 12278.981002 eV Total energy + Delta-G solvation = -2462.088907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38598 -38.77972 -35.79791 -34.01853 -33.70108 -31.17383 -29.22196 -28.17830 -25.66321 -24.54080 -23.36952 -20.85972 -18.56964 -18.03272 -17.77148 -16.82448 -16.69704 -16.31822 -15.31613 -14.75166 -14.65860 -14.35705 -14.01320 -13.91713 -13.64722 -13.28203 -12.99393 -12.89238 -12.63748 -12.57658 -12.53902 -12.12677 -11.72173 -11.48029 -11.14109 -10.66608 -10.41505 -10.28515 -9.64781 -8.24550 -6.38237 0.22085 0.44507 1.37915 1.40541 1.49005 2.37010 2.90269 3.06853 3.26532 3.54122 3.76992 3.93926 4.08347 4.16377 4.20646 4.36209 4.53965 4.72475 4.77402 4.85792 4.96032 5.11152 5.18186 5.19655 5.26839 5.30515 5.41979 5.67561 5.72760 5.84332 6.11111 6.72613 6.96184 7.05316 7.30596 8.85392 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.007212 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.969720 B = 3881.537190 C = 4158.282942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 C -0.170 4.170 4 O -0.577 6.577 5 C -0.128 4.128 6 C 0.079 3.921 7 N -0.494 5.494 8 C 0.076 3.924 9 C -0.108 4.108 10 C 0.063 3.937 11 C -0.533 4.533 12 H 0.052 0.948 13 C 0.008 3.992 14 N -0.928 5.928 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.269 1.269 19 C -0.071 4.071 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.395 0.605 27 H 0.188 0.812 28 H 0.152 0.848 29 H 0.004 0.996 30 H 0.012 0.988 31 H 0.267 0.733 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 9.815 -6.198 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.132 3.868 3 C -0.227 4.227 4 O -0.386 6.386 5 C -0.129 4.129 6 C -0.079 4.079 7 N -0.202 5.202 8 C -0.079 4.079 9 C -0.110 4.110 10 C 0.026 3.974 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.191 4.191 14 N -0.567 5.567 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.194 1.194 19 C -0.097 4.097 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.246 0.754 27 H 0.205 0.795 28 H 0.169 0.831 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.793 9.322 -4.987 17.379 hybrid contribution 1.510 0.268 -0.870 1.763 sum -12.284 9.590 -5.857 16.648 Atomic orbital electron populations 1.22499 0.92464 1.03074 1.04708 1.19868 0.94051 0.90445 0.82405 1.22455 1.01228 0.94688 1.04336 1.86592 1.77790 1.57708 1.16549 1.20890 0.95068 0.99795 0.97186 1.23025 1.00129 0.97361 0.87334 1.67687 1.14548 1.08328 1.29611 1.22609 0.90308 0.97245 0.97752 1.21383 0.97219 0.97878 0.94551 1.18010 0.88788 0.94409 0.96238 1.21280 0.92712 0.96380 1.46744 0.92961 1.25908 1.01325 0.96872 0.94973 1.70062 1.21074 1.16136 1.49422 0.85493 0.77720 0.78652 0.79173 1.19196 1.20255 1.19367 1.21320 0.95780 0.95188 0.97400 0.89707 0.89176 0.92534 0.93977 0.88879 0.90658 0.75429 0.79539 0.83095 0.97742 0.97005 0.92372 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 8.13 71.98 0.59 -2.15 16 2 C 0.17 4.07 1.24 -11.54 -0.01 4.05 16 3 C -0.17 -3.40 8.80 71.98 0.63 -2.77 16 4 O -0.58 -14.51 12.03 -148.98 -1.79 -16.31 16 5 C -0.13 -4.19 4.85 -19.78 -0.10 -4.29 16 6 C 0.08 2.49 10.31 84.68 0.87 3.36 16 7 N -0.49 -18.67 10.36 -195.84 -2.03 -20.70 16 8 C 0.08 3.24 10.86 84.67 0.92 4.16 16 9 C -0.11 -5.04 5.09 -19.77 -0.10 -5.14 16 10 C 0.06 3.47 5.13 29.10 0.15 3.62 16 11 C -0.53 -30.98 9.09 25.60 0.23 -30.75 16 12 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 13 C 0.01 0.46 5.46 84.65 0.46 0.92 16 14 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 15 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C -0.07 -2.96 9.15 22.47 0.21 -2.75 16 20 H 0.08 1.11 6.54 -2.38 -0.02 1.10 16 21 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.40 5.65 9.04 -74.06 -0.67 4.98 16 27 H 0.19 4.18 6.19 -2.91 -0.02 4.16 16 28 H 0.15 6.21 8.06 -2.91 -0.02 6.19 16 29 H 0.00 0.25 8.10 -2.39 -0.02 0.23 16 30 H 0.01 0.67 8.09 -2.38 -0.02 0.65 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.12 5.21 7.57 -2.91 -0.02 5.18 16 Total: -1.00 -69.54 275.00 2.78 -66.76 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.44 Total: 11.32 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.85 Total: -31.74 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -1.74 Total: -76.64 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.79 Total: -16.31 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.54 2.78 -66.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054381.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds