Wall clock time and date at job start Sun Mar 29 2020 22:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 O 1.42901 * 109.46608 * 119.99815 * 2 1 3 5 5 C 1.35677 * 116.99404 * 150.00414 * 4 2 1 6 6 C 1.38925 * 119.68043 * 179.97438 * 5 4 2 7 7 C 1.38381 * 119.10900 * 180.02562 * 6 5 4 8 8 C 1.38830 * 118.48403 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.34988 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47352 * 269.97452 * 9 8 7 11 11 H 1.07999 * 119.99391 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00052 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99966 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47265 * 59.99768 * 14 12 10 16 16 H 1.48494 * 109.47386 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46968 * 300.00225 * 14 12 10 18 18 C 1.38037 * 119.29315 * 359.97438 * 8 7 6 19 19 N 1.31964 * 120.83403 * 359.97438 * 18 8 7 20 20 H 1.09001 * 109.47055 * 300.00144 * 1 2 3 21 21 H 1.09000 * 109.46855 * 59.99920 * 1 2 3 22 22 H 1.08994 * 109.46864 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47055 * 239.99856 * 2 1 3 24 24 H 1.09000 * 109.47311 * 299.99801 * 3 2 1 25 25 H 1.09007 * 109.47228 * 59.99543 * 3 2 1 26 26 H 1.08993 * 109.47129 * 179.97438 * 3 2 1 27 27 H 1.08001 * 120.44570 * 359.97438 * 6 5 4 28 28 H 1.08005 * 120.75686 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47110 * 29.97938 * 9 8 7 30 30 H 1.09006 * 109.46827 * 149.98012 * 9 8 7 31 31 H 0.97005 * 119.99899 * 179.97438 * 13 12 10 32 32 H 1.08004 * 119.58455 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1987 -1.3129 1.0653 6 6 3.7146 -1.9854 2.1661 7 6 4.9320 -2.6330 2.0495 8 6 5.5938 -2.5842 0.8301 9 6 6.9218 -3.2751 0.6563 10 6 8.0342 -2.3214 1.0085 11 1 7.8026 -1.3157 1.3269 12 6 9.3474 -2.7328 0.9244 13 7 9.6293 -3.9573 0.5363 14 14 10.7263 -1.5509 1.3617 15 1 10.5763 -1.1160 2.7737 16 1 12.0349 -2.2312 1.1891 17 1 10.6637 -0.3655 0.4694 18 6 5.0220 -1.8971 -0.2217 19 7 3.8588 -1.2899 -0.0804 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 3.1732 -2.0019 3.1004 28 1 5.3579 -3.1635 2.8883 29 1 6.9675 -4.1447 1.3118 30 1 7.0320 -3.5950 -0.3800 31 1 10.5533 -4.2466 0.4767 32 1 5.5329 -1.8557 -1.1723 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:04 Heat of formation + Delta-G solvation = -22.994485 kcal Electronic energy + Delta-G solvation = -14434.792359 eV Core-core repulsion = 11974.160473 eV Total energy + Delta-G solvation = -2460.631887 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11745 -37.90711 -33.76578 -32.91736 -31.89289 -30.54994 -27.29485 -26.84004 -23.60720 -23.41773 -21.21068 -20.57921 -18.08960 -16.37365 -16.26341 -15.35208 -14.88339 -14.30592 -14.20044 -14.05063 -13.41165 -12.90113 -12.49858 -12.38237 -12.30968 -12.13299 -11.82859 -11.55801 -11.29107 -10.80985 -10.73893 -10.60764 -10.51829 -9.81094 -9.57205 -9.12462 -8.92702 -8.45331 -7.61889 -6.08418 -4.13209 1.78221 1.99156 3.29781 3.34176 3.37263 3.38178 4.34258 4.50100 4.82391 4.95117 5.04370 5.25871 5.29510 5.49211 5.53582 5.64545 5.71826 5.75356 5.81683 5.86193 6.10936 6.18064 6.24174 6.28407 6.71757 6.91096 7.12054 7.46853 7.64540 7.77182 7.86404 8.25532 8.45240 8.91571 9.51334 11.00984 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049241 B = 0.005767 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.498988 B = 4853.708613 C = 5060.310165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.167 4.167 4 O -0.310 6.310 5 C 0.286 3.714 6 C -0.192 4.192 7 C -0.050 4.050 8 C -0.116 4.116 9 C 0.057 3.943 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.125 3.875 19 N -0.541 5.541 20 H 0.061 0.939 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 5.706 -0.178 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 C -0.225 4.225 4 O -0.219 6.219 5 C 0.108 3.892 6 C -0.212 4.212 7 C -0.076 4.076 8 C -0.118 4.118 9 C 0.019 3.981 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.030 4.030 19 N -0.264 5.264 20 H 0.081 0.919 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.154 6.063 -0.705 15.414 hybrid contribution 1.290 0.276 0.764 1.525 sum -12.864 6.339 0.060 14.341 Atomic orbital electron populations 1.21890 0.93549 1.02663 1.02495 1.22190 0.93812 0.92671 0.88778 1.22198 1.02441 0.95908 1.01924 1.86226 1.32577 1.65154 1.37985 1.19618 0.86493 0.92607 0.90520 1.20960 0.98397 1.03503 0.98354 1.21373 0.92266 0.96059 0.97878 1.21517 0.98883 0.98341 0.93109 1.18225 0.86253 0.95193 0.98390 1.21025 0.90244 0.98352 1.45795 0.92608 1.24993 0.98805 0.95246 0.95093 1.69940 1.19371 1.16826 1.47036 0.86596 0.81012 0.81000 0.79091 1.20168 1.21176 1.20146 1.22295 0.89108 0.92234 0.99329 1.67142 1.10970 1.23726 1.24563 0.91944 0.90908 0.92036 0.89472 0.91576 0.92378 0.91833 0.85278 0.84607 0.95143 0.95062 0.92702 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.56 37.16 0.36 -1.17 16 2 C 0.08 1.11 3.11 -26.73 -0.08 1.03 16 3 C -0.17 -2.07 9.53 37.16 0.35 -1.72 16 4 O -0.31 -5.09 9.76 -18.73 -0.18 -5.28 16 5 C 0.29 5.23 7.45 -17.12 -0.13 5.10 16 6 C -0.19 -3.36 10.04 -39.27 -0.39 -3.76 16 7 C -0.05 -0.95 9.85 -39.31 -0.39 -1.34 16 8 C -0.12 -2.47 5.09 -104.47 -0.53 -3.01 16 9 C 0.06 1.41 5.13 -29.03 -0.15 1.26 16 10 C -0.52 -14.10 9.09 -34.44 -0.31 -14.41 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 14 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.12 2.49 10.85 -17.57 -0.19 2.30 16 19 N -0.54 -10.31 8.65 -13.33 -0.12 -10.42 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.09 1.27 6.98 -51.93 -0.36 0.91 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 LS Contribution 279.96 15.07 4.22 4.22 Total: -1.00 -29.30 279.96 -6.48 -35.78 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.55 Total: -1.29 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.56 Total: -14.13 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.62 Total: -35.51 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.18 Total: -5.28 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.30 -6.48 -35.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.783 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds