Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 O 1.42901 * 109.47060 * 119.99935 * 2 1 3 5 5 C 1.35907 * 117.00011 * 155.11868 * 4 2 1 6 6 C 1.38750 * 120.47751 * 185.51839 * 5 4 2 7 7 N 1.31820 * 120.68331 * 179.97438 * 6 5 4 8 8 C 1.31875 * 121.77982 * 359.70283 * 7 6 5 9 9 C 1.38209 * 120.88799 * 0.58936 * 8 7 6 10 10 C 1.50701 * 120.38967 * 179.69675 * 9 8 7 11 11 C 1.50702 * 109.47273 * 269.72704 * 10 9 8 12 12 H 1.07996 * 119.99733 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99749 * 180.27756 * 11 10 9 14 14 N 1.31519 * 119.99626 * 179.72388 * 13 11 10 15 15 Si 1.86799 * 120.00074 * 359.71710 * 13 11 10 16 16 H 1.48502 * 109.47076 * 90.00761 * 15 13 11 17 17 H 1.48495 * 109.46969 * 210.00076 * 15 13 11 18 18 H 1.48500 * 109.47266 * 330.00556 * 15 13 11 19 19 C 1.38580 * 119.22231 * 359.42844 * 9 8 7 20 20 H 1.09000 * 109.47018 * 299.99723 * 1 2 3 21 21 H 1.08999 * 109.47571 * 59.99920 * 1 2 3 22 22 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46714 * 239.99869 * 2 1 3 24 24 H 1.09000 * 109.46930 * 60.00223 * 3 2 1 25 25 H 1.08997 * 109.47034 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47328 * 299.99828 * 3 2 1 27 27 H 1.07997 * 119.65832 * 359.95897 * 6 5 4 28 28 H 1.07996 * 119.55372 * 180.30794 * 8 7 6 29 29 H 1.09004 * 109.47239 * 149.72230 * 10 9 8 30 30 H 1.09003 * 109.46818 * 29.72563 * 10 9 8 31 31 H 0.97002 * 119.99396 * 179.97438 * 14 13 11 32 32 H 1.08003 * 120.81345 * 180.25834 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2477 -1.2226 1.0987 6 6 3.7362 -1.9901 2.1464 7 7 4.9394 -2.5249 2.0844 8 6 5.7194 -2.3604 1.0339 9 6 5.3048 -1.6041 -0.0461 10 6 6.2079 -1.4178 -1.2380 11 6 7.0581 -0.1898 -1.0371 12 1 6.9544 0.3973 -0.1366 13 6 7.9637 0.1876 -2.0058 14 7 8.7018 1.2624 -1.8329 15 14 8.1426 -0.8276 -3.5636 16 1 7.2037 -0.3196 -4.5960 17 1 9.5358 -0.7213 -4.0664 18 1 7.8304 -2.2487 -3.2669 19 6 4.0466 -1.0237 -0.0224 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 3.1244 -2.1507 3.0218 28 1 6.6970 -2.8190 1.0191 29 1 5.6032 -1.2980 -2.1370 30 1 6.8511 -2.2912 -1.3465 31 1 9.3392 1.5277 -2.5143 32 1 3.6949 -0.4311 -0.8541 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -38.753235 kcal Electronic energy + Delta-G solvation = -14705.510247 eV Core-core repulsion = 12244.195010 eV Total energy + Delta-G solvation = -2461.315237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65672 -39.47812 -35.79550 -34.26504 -33.84259 -31.46559 -29.65641 -28.18887 -25.43424 -24.82571 -22.53679 -21.94634 -19.01709 -18.88676 -17.76047 -17.65188 -16.49094 -16.39445 -15.41087 -15.13802 -15.00475 -14.47954 -14.14595 -13.86908 -13.72546 -13.48537 -13.18589 -13.07220 -12.87799 -12.60974 -12.34178 -12.00307 -11.86451 -11.71834 -11.66933 -10.82332 -10.48961 -10.29382 -9.27350 -8.32164 -6.39020 0.27552 0.31324 1.36838 1.39612 1.51052 2.13190 2.34015 2.85983 3.02283 3.60989 3.72605 3.84821 3.89114 4.01269 4.12766 4.23341 4.27985 4.65042 4.70851 4.78021 4.86744 4.87923 4.96430 5.01526 5.07534 5.20646 5.28066 5.47500 5.54535 5.59662 6.19363 6.31470 6.66616 7.01855 7.24818 8.84313 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.008018 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.707454 B = 3491.227633 C = 4057.502967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.065 3.935 3 C -0.180 4.180 4 O -0.310 6.310 5 C 0.084 3.916 6 C 0.043 3.957 7 N -0.460 5.460 8 C 0.041 3.959 9 C -0.063 4.063 10 C 0.025 3.975 11 C -0.524 4.524 12 H 0.025 0.975 13 C 0.011 3.989 14 N -0.947 5.947 15 Si 0.951 3.049 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.241 1.241 19 C -0.174 4.174 20 H 0.070 0.930 21 H 0.098 0.902 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.269 0.731 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 -4.613 0.705 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 C -0.238 4.238 4 O -0.223 6.223 5 C 0.037 3.963 6 C -0.116 4.116 7 N -0.169 5.169 8 C -0.115 4.115 9 C -0.065 4.065 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.043 0.957 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.773 3.227 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.165 1.165 19 C -0.200 4.200 20 H 0.089 0.911 21 H 0.117 0.883 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.199 0.801 28 H 0.177 0.823 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.447 -4.992 1.494 16.302 hybrid contribution 0.534 0.802 -1.427 1.722 sum -14.913 -4.191 0.066 15.491 Atomic orbital electron populations 1.21848 0.89812 1.03672 1.04273 1.22764 0.97176 0.92440 0.86668 1.22384 1.00923 0.96205 1.04238 1.86084 1.27798 1.68188 1.40222 1.20136 0.86057 0.94811 0.95325 1.22450 0.93206 0.97233 0.98662 1.67667 1.04206 1.19712 1.25280 1.22631 0.99951 0.99591 0.89371 1.21013 0.94005 0.93681 0.97833 1.18634 0.93887 0.96634 0.92160 1.21052 1.20746 1.09712 1.04622 0.95705 1.25974 0.94484 0.96006 1.02188 1.70060 1.25322 1.26624 1.36708 0.85650 0.77789 0.80616 0.78627 1.18857 1.20931 1.16467 1.21753 0.95110 1.03495 0.99678 0.91103 0.88340 0.91360 0.90974 0.91051 0.94386 0.88857 0.80077 0.82316 0.94469 0.93868 0.92245 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.56 71.98 0.69 -1.54 16 2 C 0.07 1.53 2.85 30.59 0.09 1.61 16 3 C -0.18 -4.31 9.19 71.98 0.66 -3.65 16 4 O -0.31 -8.98 9.81 -92.50 -0.91 -9.89 16 5 C 0.08 2.85 6.62 22.60 0.15 3.00 16 6 C 0.04 1.45 11.14 84.82 0.94 2.39 16 7 N -0.46 -17.32 10.36 -195.44 -2.02 -19.34 16 8 C 0.04 1.63 10.85 84.68 0.92 2.55 16 9 C -0.06 -2.65 5.08 -19.79 -0.10 -2.75 16 10 C 0.02 1.13 4.20 29.10 0.12 1.26 16 11 C -0.52 -29.73 9.65 25.60 0.25 -29.48 16 12 H 0.02 1.60 7.98 -2.91 -0.02 1.57 16 13 C 0.01 0.63 5.47 84.65 0.46 1.09 16 14 N -0.95 -58.49 13.96 21.45 0.30 -58.20 16 15 Si 0.95 42.32 27.46 68.60 1.88 44.20 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.24 -9.82 6.55 99.48 0.65 -9.17 16 19 C -0.17 -6.51 8.02 22.56 0.18 -6.33 16 20 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.71 6.36 -2.39 -0.02 1.70 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.15 6.92 -2.39 -0.02 1.14 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.18 4.85 8.06 -2.91 -0.02 4.83 16 28 H 0.16 5.98 8.06 -2.91 -0.02 5.96 16 29 H 0.04 1.61 7.52 -2.38 -0.02 1.59 16 30 H 0.04 1.90 7.16 -2.39 -0.02 1.88 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.14 5.01 5.59 -2.91 -0.02 4.99 16 Total: -1.00 -66.30 271.64 4.66 -61.64 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.04 Total: 13.44 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 4.36 Total: -31.86 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.72 Total: -77.53 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.91 Total: -9.89 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -66.30 4.66 -61.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.890 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds