Wall clock time and date at job start Sun Mar 29 2020 22:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47206 * 2 1 4 4 C 1.35669 * 117.00012 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.68883 * 179.97438 * 4 3 2 6 6 C 1.38377 * 119.11721 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.75811 * 180.02562 * 6 5 4 8 8 C 1.38823 * 118.48330 * 0.27787 * 6 5 4 9 9 C 1.50702 * 120.35456 * 179.72398 * 8 6 5 10 10 C 1.50699 * 109.47051 * 84.99973 * 9 8 6 11 11 H 1.08003 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00108 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99893 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99967 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47171 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47113 * 119.99621 * 14 12 10 17 17 H 1.48498 * 109.46530 * 239.99371 * 14 12 10 18 18 C 1.38045 * 119.29031 * 359.47325 * 8 6 5 19 19 N 1.31963 * 120.83375 * 0.53837 * 18 8 6 20 20 H 1.09003 * 109.47234 * 300.00002 * 1 2 3 21 21 H 1.09000 * 109.47647 * 59.99937 * 1 2 3 22 22 H 1.09004 * 109.47273 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46841 * 239.99651 * 2 1 3 24 24 H 1.09002 * 109.47168 * 120.00251 * 2 1 3 25 25 H 1.08009 * 120.43775 * 359.97438 * 5 4 3 26 26 H 1.09002 * 109.47152 * 90.00211 * 7 6 5 27 27 H 1.09001 * 109.46980 * 330.00311 * 7 6 5 28 28 H 1.09004 * 109.47113 * 210.00292 * 7 6 5 29 29 H 1.09003 * 109.47258 * 204.99693 * 9 8 6 30 30 H 1.08999 * 109.47525 * 325.00132 * 9 8 6 31 31 H 0.97005 * 120.00055 * 180.02562 * 13 12 10 32 32 H 1.08003 * 119.58943 * 180.25150 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5250 -0.0005 5 6 3.8753 2.8115 -0.0011 6 6 5.2489 2.9791 -0.0011 7 6 5.8571 4.3580 -0.0011 8 6 6.0539 1.8481 -0.0065 9 6 7.5549 1.9817 -0.0130 10 6 8.0506 2.1474 1.4005 11 1 7.3489 2.1556 2.2215 12 6 9.4000 2.2896 1.6457 13 7 10.2545 2.2801 0.6461 14 14 10.0144 2.4942 3.3979 15 1 8.8610 2.4709 4.3328 16 1 10.9434 1.3842 3.7295 17 1 10.7273 3.7908 3.5240 18 6 5.4646 0.5998 -0.0005 19 7 4.1512 0.4718 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.2193 3.6696 -0.0015 26 1 6.0038 4.6904 1.0265 27 1 5.1894 5.0496 -0.5149 28 1 6.8180 4.3312 -0.5150 29 1 7.9975 1.0869 -0.4506 30 1 7.8396 2.8533 -0.6023 31 1 11.2038 2.3798 0.8186 32 1 6.0863 -0.2834 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:28 Heat of formation + Delta-G solvation = -43.008932 kcal Electronic energy + Delta-G solvation = -14532.557677 eV Core-core repulsion = 12071.057899 eV Total energy + Delta-G solvation = -2461.499778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.57921 -39.20099 -35.71981 -34.51083 -33.20333 -31.91772 -29.04572 -28.41156 -25.36803 -24.47689 -23.08740 -21.91666 -18.88554 -18.49171 -17.90678 -17.20663 -16.74657 -15.70771 -15.48889 -15.15805 -14.87923 -14.32714 -13.99384 -13.73941 -13.61855 -13.31468 -13.20788 -13.01748 -12.79673 -12.50794 -12.46663 -12.35952 -11.74421 -11.60591 -11.41073 -10.63751 -10.41914 -10.29582 -9.19846 -8.16984 -6.28912 0.26942 0.43496 1.40312 1.42580 1.54145 2.11870 2.41489 2.88725 3.14383 3.43706 3.99783 4.10699 4.10871 4.19159 4.23145 4.38375 4.49930 4.69794 4.78743 4.84710 4.92936 4.97459 5.05458 5.19192 5.23760 5.36906 5.39253 5.66347 5.78347 5.84645 6.19747 6.36176 6.81977 6.94316 7.39299 8.91811 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044496 B = 0.006229 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.112104 B = 4493.850049 C = 4657.547630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 O -0.317 6.317 4 C 0.287 3.713 5 C -0.190 4.190 6 C -0.018 4.018 7 C -0.105 4.105 8 C -0.146 4.146 9 C 0.069 3.931 10 C -0.520 4.520 11 H 0.049 0.951 12 C 0.012 3.988 13 N -0.926 5.926 14 Si 0.957 3.043 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.276 1.276 18 C 0.120 3.880 19 N -0.553 5.553 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.160 0.840 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.006 0.994 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.787 -0.288 -1.121 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 O -0.226 6.226 4 C 0.108 3.892 5 C -0.210 4.210 6 C -0.025 4.025 7 C -0.161 4.161 8 C -0.148 4.148 9 C 0.031 3.969 10 C -0.558 4.558 11 H 0.067 0.933 12 C -0.187 4.187 13 N -0.566 5.566 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.201 1.201 18 C -0.034 4.034 19 N -0.277 5.277 20 H 0.085 0.915 21 H 0.087 0.913 22 H 0.118 0.882 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.178 0.822 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.220 -0.926 -1.163 15.292 hybrid contribution 1.273 0.402 0.753 1.532 sum -13.947 -0.525 -0.410 13.963 Atomic orbital electron populations 1.21813 0.90534 1.04236 1.03426 1.22746 0.96480 0.80482 1.01774 1.86173 1.16293 1.31631 1.88470 1.19905 0.84233 0.90353 0.94726 1.21062 0.94781 0.96039 1.09103 1.20268 0.92104 0.96970 0.93174 1.20771 1.01075 0.91046 1.03229 1.21186 0.98738 0.93786 1.01106 1.17967 0.85844 0.96601 0.96454 1.21290 0.92034 1.49767 0.92688 0.93306 1.25768 0.97052 0.94885 1.00975 1.70061 1.02818 1.51072 1.32688 0.85510 0.78274 0.77931 0.80020 1.19378 1.20493 1.20122 1.22304 0.88739 0.97349 0.94987 1.67249 1.06386 1.33691 1.20355 0.91516 0.91347 0.88237 0.92375 0.92675 0.82192 0.90482 0.88864 0.91758 0.97588 0.96131 0.92613 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.06 1.53 6.03 71.98 0.43 1.97 16 3 O -0.32 -9.99 10.12 -89.86 -0.91 -10.90 16 4 C 0.29 10.36 7.49 84.79 0.63 10.99 16 5 C -0.19 -6.48 9.75 22.47 0.22 -6.26 16 6 C -0.02 -0.67 5.91 -19.69 -0.12 -0.79 16 7 C -0.11 -3.51 9.68 71.24 0.69 -2.82 16 8 C -0.15 -6.37 5.09 -19.77 -0.10 -6.47 16 9 C 0.07 3.50 4.66 29.10 0.14 3.63 16 10 C -0.52 -28.47 9.09 25.60 0.23 -28.23 16 11 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 12 C 0.01 0.65 5.46 84.66 0.46 1.11 16 13 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 14 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 C 0.12 4.95 10.83 84.63 0.92 5.86 16 19 N -0.55 -21.42 9.22 -308.96 -2.85 -24.26 16 20 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 24 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 25 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.09 2.38 8.10 -2.39 -0.02 2.37 16 28 H 0.06 2.41 6.15 -2.38 -0.01 2.39 16 29 H 0.01 0.32 8.06 -2.39 -0.02 0.30 16 30 H 0.02 1.09 6.28 -2.39 -0.01 1.08 16 31 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 32 H 0.16 6.15 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -62.34 277.28 3.90 -58.44 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.10 Total: 7.64 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 4.25 Total: -22.70 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.56 Total: -77.79 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.91 Total: -10.90 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.34 3.90 -58.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.430 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds