Wall clock time and date at job start Sun Mar 29 2020 21:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47018 * 2 1 4 4 N 1.31969 * 119.57881 * 269.97590 * 3 2 1 5 5 C 1.32253 * 121.64334 * 180.02562 * 4 3 2 6 6 O 1.35677 * 119.67889 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00556 * 359.97438 * 6 5 4 8 8 C 1.38912 * 120.63215 * 359.71406 * 5 4 3 9 9 C 1.38380 * 119.11330 * 0.56251 * 8 5 4 10 10 C 1.38038 * 119.58690 * 90.00326 * 3 2 1 11 11 C 1.50703 * 120.35276 * 359.97438 * 10 3 2 12 12 C 1.50703 * 109.47015 * 84.98075 * 11 10 3 13 13 H 1.07995 * 120.00239 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99710 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00080 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47344 * 89.99796 * 16 14 12 18 18 H 1.48500 * 109.46992 * 209.99759 * 16 14 12 19 19 H 1.48499 * 109.47087 * 329.99562 * 16 14 12 20 20 H 1.09005 * 109.47266 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46968 * 300.00280 * 1 2 3 22 22 H 1.08998 * 109.47123 * 60.00271 * 1 2 3 23 23 H 1.09002 * 109.46968 * 239.99720 * 2 1 3 24 24 H 1.09005 * 109.46837 * 119.99970 * 2 1 3 25 25 H 1.09002 * 109.46981 * 300.00364 * 7 6 5 26 26 H 1.09002 * 109.46851 * 60.00204 * 7 6 5 27 27 H 1.08999 * 109.47537 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.44502 * 180.28774 * 8 5 4 29 29 H 1.08002 * 120.76272 * 179.73247 * 9 8 5 30 30 H 1.09000 * 109.47361 * 204.98104 * 11 10 3 31 31 H 1.08999 * 109.47519 * 324.98337 * 11 10 3 32 32 H 0.97000 * 119.99884 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2500 2.0348 -1.1477 5 6 2.6910 3.2807 -1.1954 6 8 2.9006 3.8737 -2.3976 7 6 2.6247 3.0936 -3.5626 8 6 2.9355 3.9902 -0.0264 9 6 2.7228 3.3721 1.1933 10 6 2.2596 2.0633 1.2004 11 6 2.0075 1.3518 2.5047 12 6 3.2219 0.5409 2.8774 13 1 4.0895 0.5411 2.2344 14 6 3.2255 -0.2005 4.0399 15 7 4.2855 -0.9077 4.3654 16 14 1.7251 -0.2003 5.1526 17 1 0.8096 -1.2976 4.7492 18 1 2.1525 -0.4045 6.5600 19 1 1.0204 1.1014 5.0331 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.2540 2.2036 -3.5613 26 1 1.5759 2.7970 -3.5613 27 1 2.8343 3.6850 -4.4539 28 1 3.2913 5.0091 -0.0688 29 1 2.9084 3.8973 2.1186 30 1 1.8066 2.0851 3.2857 31 1 1.1479 0.6903 2.3976 32 1 4.2880 -1.4296 5.1831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:08 Heat of formation + Delta-G solvation = -19.478247 kcal Electronic energy + Delta-G solvation = -14900.927630 eV Core-core repulsion = 12440.448219 eV Total energy + Delta-G solvation = -2460.479411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21765 -37.83722 -33.88350 -33.28418 -31.86212 -29.98477 -27.99401 -26.50454 -24.03626 -22.95570 -21.16591 -20.51050 -17.77036 -16.83632 -16.41904 -15.65065 -14.79682 -14.32317 -14.19743 -13.87678 -13.23186 -13.17148 -12.74820 -12.53471 -12.03785 -11.79544 -11.67153 -11.59084 -11.17034 -10.78454 -10.57240 -10.42701 -10.17473 -10.04856 -9.46550 -9.11409 -8.99492 -8.62378 -7.58534 -6.12080 -4.11847 1.70910 1.93148 3.24791 3.33542 3.35320 3.45940 4.32203 4.36859 4.69795 5.18951 5.35807 5.42429 5.47691 5.54518 5.63415 5.66159 5.79450 5.82076 5.89314 6.01696 6.23975 6.35006 6.49069 6.62926 6.73234 6.82938 6.91089 7.10938 7.32591 7.61996 7.69850 8.41226 8.46554 8.93043 9.47761 11.00640 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037894 B = 0.008016 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.734077 B = 3492.371633 C = 3778.131224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C 0.166 3.834 4 N -0.539 5.539 5 C 0.290 3.710 6 O -0.317 6.317 7 C 0.044 3.956 8 C -0.196 4.196 9 C -0.049 4.049 10 C -0.110 4.110 11 C 0.023 3.977 12 C -0.514 4.514 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.264 1.264 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.107 0.893 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 5.981 -9.480 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C 0.030 3.970 4 N -0.262 5.262 5 C 0.112 3.888 6 O -0.225 6.225 7 C -0.051 4.051 8 C -0.216 4.216 9 C -0.074 4.074 10 C -0.113 4.113 11 C -0.015 4.015 12 C -0.552 4.552 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.701 3.299 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.189 1.189 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.125 0.875 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.262 5.684 -10.200 13.249 hybrid contribution -0.440 0.215 1.242 1.335 sum -6.702 5.899 -8.958 12.647 Atomic orbital electron populations 1.21675 0.95068 1.01492 1.01546 1.20578 0.95590 0.90975 1.04564 1.20689 0.94033 0.95807 0.86490 1.67009 1.18433 1.09294 1.31486 1.19623 0.94798 0.88896 0.85523 1.86170 1.82973 1.41017 1.12361 1.22706 1.01359 0.96108 0.84943 1.20914 1.08749 1.01586 0.90363 1.21329 0.94718 0.94333 0.97037 1.20924 0.98687 0.94108 0.97545 1.18725 0.98176 0.95477 0.89102 1.20896 0.99953 1.26912 1.07413 0.90909 1.24983 0.95903 0.94806 0.97344 1.69898 1.28782 1.29915 1.24953 0.86853 0.83583 0.79166 0.80254 1.19995 1.21244 1.18902 0.92361 0.92544 0.93251 0.91106 0.87456 0.92643 0.92780 0.89398 0.85103 0.84502 0.95469 0.95204 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.77 37.16 0.36 -1.80 16 2 C -0.08 -1.45 5.55 -27.88 -0.15 -1.60 16 3 C 0.17 3.32 6.03 -82.61 -0.50 2.82 16 4 N -0.54 -10.43 9.13 -9.55 -0.09 -10.51 16 5 C 0.29 5.35 7.49 -17.12 -0.13 5.22 16 6 O -0.32 -5.20 10.48 -18.73 -0.20 -5.40 16 7 C 0.04 0.57 10.38 101.05 1.05 1.62 16 8 C -0.20 -3.42 10.04 -39.28 -0.39 -3.81 16 9 C -0.05 -0.91 9.83 -39.31 -0.39 -1.30 16 10 C -0.11 -2.31 5.09 -104.47 -0.53 -2.84 16 11 C 0.02 0.52 3.50 -29.03 -0.10 0.42 16 12 C -0.51 -13.96 8.86 -34.44 -0.31 -14.26 16 13 H 0.07 2.20 7.98 -52.49 -0.42 1.78 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 16 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.11 2.19 6.13 -51.93 -0.32 1.88 16 25 H 0.05 0.74 8.10 -51.93 -0.42 0.31 16 26 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.03 0.61 7.12 -51.93 -0.37 0.24 16 31 H 0.03 0.66 5.49 -51.93 -0.29 0.37 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -30.09 271.02 -5.60 -35.68 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.32 Total: -0.19 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.19 Total: -13.64 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.69 Total: -36.47 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.09 -5.60 -35.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.206 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds