Wall clock time and date at job start Sun Mar 29 2020 21:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47018 * 2 1 4 4 N 1.31969 * 119.57881 * 269.97590 * 3 2 1 5 5 C 1.32253 * 121.64334 * 180.02562 * 4 3 2 6 6 O 1.35677 * 119.67889 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00556 * 359.97438 * 6 5 4 8 8 C 1.38912 * 120.63215 * 359.71406 * 5 4 3 9 9 C 1.38380 * 119.11330 * 0.56251 * 8 5 4 10 10 C 1.38038 * 119.58690 * 90.00326 * 3 2 1 11 11 C 1.50703 * 120.35276 * 359.97438 * 10 3 2 12 12 C 1.50703 * 109.47015 * 84.98075 * 11 10 3 13 13 H 1.07995 * 120.00239 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99710 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00080 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47344 * 89.99796 * 16 14 12 18 18 H 1.48500 * 109.46992 * 209.99759 * 16 14 12 19 19 H 1.48499 * 109.47087 * 329.99562 * 16 14 12 20 20 H 1.09005 * 109.47266 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46968 * 300.00280 * 1 2 3 22 22 H 1.08998 * 109.47123 * 60.00271 * 1 2 3 23 23 H 1.09002 * 109.46968 * 239.99720 * 2 1 3 24 24 H 1.09005 * 109.46837 * 119.99970 * 2 1 3 25 25 H 1.09002 * 109.46981 * 300.00364 * 7 6 5 26 26 H 1.09002 * 109.46851 * 60.00204 * 7 6 5 27 27 H 1.08999 * 109.47537 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.44502 * 180.28774 * 8 5 4 29 29 H 1.08002 * 120.76272 * 179.73247 * 9 8 5 30 30 H 1.09000 * 109.47361 * 204.98104 * 11 10 3 31 31 H 1.08999 * 109.47519 * 324.98337 * 11 10 3 32 32 H 0.97000 * 119.99884 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2500 2.0348 -1.1477 5 6 2.6910 3.2807 -1.1954 6 8 2.9006 3.8737 -2.3976 7 6 2.6247 3.0936 -3.5626 8 6 2.9355 3.9902 -0.0264 9 6 2.7228 3.3721 1.1933 10 6 2.2596 2.0633 1.2004 11 6 2.0075 1.3518 2.5047 12 6 3.2219 0.5409 2.8774 13 1 4.0895 0.5411 2.2344 14 6 3.2255 -0.2005 4.0399 15 7 4.2855 -0.9077 4.3654 16 14 1.7251 -0.2003 5.1526 17 1 0.8096 -1.2976 4.7492 18 1 2.1525 -0.4045 6.5600 19 1 1.0204 1.1014 5.0331 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.2540 2.2036 -3.5613 26 1 1.5759 2.7970 -3.5613 27 1 2.8343 3.6850 -4.4539 28 1 3.2913 5.0091 -0.0688 29 1 2.9084 3.8973 2.1186 30 1 1.8066 2.0851 3.2857 31 1 1.1479 0.6903 2.3976 32 1 4.2880 -1.4296 5.1831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:08 Heat of formation + Delta-G solvation = -39.549320 kcal Electronic energy + Delta-G solvation = -14901.797977 eV Core-core repulsion = 12440.448219 eV Total energy + Delta-G solvation = -2461.349758 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64444 -39.17998 -35.59340 -34.83012 -33.67621 -31.47773 -29.52854 -27.84487 -25.55889 -24.55448 -22.70440 -22.06523 -19.12102 -18.91993 -17.83076 -16.92807 -16.60904 -15.79963 -15.61301 -15.35311 -14.66595 -14.56141 -14.47627 -14.05673 -13.69970 -13.37551 -13.12217 -12.75642 -12.58936 -12.47485 -12.12310 -11.88790 -11.81405 -11.68433 -11.50153 -10.75715 -10.61373 -10.46510 -9.09023 -8.25885 -6.30829 0.25662 0.43434 1.40786 1.42415 1.53504 2.20266 2.38678 2.84228 3.08736 3.30238 3.94967 4.14188 4.17985 4.35868 4.41441 4.44773 4.51935 4.53419 4.60730 4.77080 4.83661 5.01403 5.08954 5.12219 5.16963 5.26419 5.41125 5.53065 5.66964 5.67574 6.26375 6.34956 6.74740 6.96114 7.32448 8.90578 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037894 B = 0.008016 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.734077 B = 3492.371633 C = 3778.131224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C 0.155 3.845 4 N -0.547 5.547 5 C 0.285 3.715 6 O -0.319 6.319 7 C 0.039 3.961 8 C -0.193 4.193 9 C -0.051 4.051 10 C -0.143 4.143 11 C 0.033 3.967 12 C -0.512 4.512 13 H 0.024 0.976 14 C 0.012 3.988 15 N -0.949 5.949 16 Si 0.944 3.056 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.243 1.243 20 H 0.078 0.922 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 7.241 -10.075 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C 0.020 3.980 4 N -0.271 5.271 5 C 0.106 3.894 6 O -0.227 6.227 7 C -0.056 4.056 8 C -0.213 4.213 9 C -0.076 4.076 10 C -0.145 4.145 11 C -0.005 4.005 12 C -0.550 4.550 13 H 0.042 0.958 14 C -0.185 4.185 15 N -0.590 5.590 16 Si 0.767 3.233 17 H -0.187 1.187 18 H -0.213 1.213 19 H -0.166 1.166 20 H 0.097 0.903 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.180 0.820 29 H 0.172 0.828 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.045 6.960 -10.824 15.177 hybrid contribution 0.222 -0.130 1.251 1.277 sum -7.823 6.830 -9.573 14.125 Atomic orbital electron populations 1.21629 0.92652 1.02939 1.01757 1.20548 0.97677 0.90031 1.03374 1.20895 0.94089 0.96460 0.86598 1.67037 1.19073 1.09969 1.31025 1.19990 0.93926 0.88714 0.86762 1.86180 1.82644 1.41411 1.12485 1.22991 1.01278 0.96497 0.84815 1.21219 1.07774 1.02820 0.89513 1.21583 0.93841 0.93719 0.98460 1.20884 1.01300 0.95387 0.96942 1.18543 0.96283 0.95211 0.90449 1.21048 1.00045 1.27373 1.06537 0.95798 1.25914 0.99226 0.94280 0.99114 1.70061 1.31521 1.31475 1.25899 0.85744 0.79549 0.80479 0.77518 1.18698 1.21310 1.16586 0.90320 0.92900 0.92371 0.90564 0.90256 0.93407 0.92721 0.85583 0.82047 0.82842 0.94766 0.94223 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.77 71.98 0.70 -3.17 16 2 C -0.08 -2.85 5.55 29.85 0.17 -2.68 16 3 C 0.16 6.18 6.03 42.49 0.26 6.44 16 4 N -0.55 -20.67 9.13 -297.00 -2.71 -23.38 16 5 C 0.29 10.04 7.49 84.79 0.63 10.68 16 6 O -0.32 -9.74 10.48 -89.94 -0.94 -10.68 16 7 C 0.04 0.91 10.38 113.37 1.18 2.09 16 8 C -0.19 -6.36 10.04 22.47 0.23 -6.13 16 9 C -0.05 -1.84 9.83 22.45 0.22 -1.62 16 10 C -0.14 -5.93 5.09 -19.77 -0.10 -6.03 16 11 C 0.03 1.49 3.50 29.10 0.10 1.59 16 12 C -0.51 -28.53 8.86 25.60 0.23 -28.30 16 13 H 0.02 1.52 7.98 -2.91 -0.02 1.49 16 14 C 0.01 0.67 5.47 84.65 0.46 1.13 16 15 N -0.95 -58.25 13.96 21.45 0.30 -57.95 16 16 Si 0.94 42.07 27.47 68.60 1.88 43.95 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 20 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 21 H 0.05 1.57 7.31 -2.39 -0.02 1.56 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.08 3.32 6.13 -2.38 -0.01 3.31 16 25 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 26 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 27 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 30 H 0.03 1.49 7.12 -2.39 -0.02 1.47 16 31 H 0.04 1.71 5.49 -2.39 -0.01 1.69 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -65.83 271.02 3.65 -62.18 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.05 Total: 11.90 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.07 Total: -26.02 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.41 Total: -81.33 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.94 Total: -10.68 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.95 kcal Total: -65.83 3.65 -62.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.630 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds