Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 C 1.35675 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.68314 * 179.72716 * 4 3 2 6 6 C 1.38384 * 119.11112 * 179.75573 * 5 4 3 7 7 C 1.38826 * 118.48284 * 0.51069 * 6 5 4 8 8 C 1.50700 * 120.35693 * 179.70865 * 7 6 5 9 9 C 1.50694 * 109.47041 * 265.02296 * 8 7 6 10 10 H 1.08001 * 120.00591 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00003 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99801 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00034 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47020 * 90.00243 * 13 11 9 15 15 H 1.48504 * 109.46936 * 210.00276 * 13 11 9 16 16 H 1.48507 * 109.47152 * 330.00131 * 13 11 9 17 17 C 1.38048 * 119.28948 * 359.72773 * 7 6 5 18 18 C 1.50704 * 119.58253 * 179.97438 * 17 7 6 19 19 N 1.31963 * 120.83448 * 0.02569 * 17 7 6 20 20 H 1.08996 * 109.47279 * 300.00102 * 1 2 3 21 21 H 1.08999 * 109.47266 * 60.00156 * 1 2 3 22 22 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47781 * 239.99970 * 2 1 3 24 24 H 1.08999 * 109.47266 * 119.99844 * 2 1 3 25 25 H 1.08003 * 120.45041 * 0.02562 * 5 4 3 26 26 H 1.07999 * 120.75530 * 180.24165 * 6 5 4 27 27 H 1.09003 * 109.47080 * 25.02202 * 8 7 6 28 28 H 1.08996 * 109.47061 * 145.01970 * 8 7 6 29 29 H 0.97008 * 120.00104 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47690 * 270.02847 * 18 17 7 31 31 H 1.09002 * 109.46833 * 30.02675 * 18 17 7 32 32 H 1.09001 * 109.46962 * 150.02267 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8751 2.8118 -0.0052 6 6 5.2488 2.9795 0.0006 7 6 6.0538 1.8485 0.0011 8 6 7.5549 1.9822 0.0006 9 6 8.0658 1.9031 -1.4148 10 1 7.3730 1.7691 -2.2324 11 6 9.4179 2.0019 -1.6663 12 7 10.2617 2.1647 -0.6707 13 14 10.0512 1.9047 -3.4210 14 1 10.0949 3.2681 -4.0077 15 1 11.4168 1.3210 -3.4227 16 1 9.1455 1.0475 -4.2273 17 6 5.4646 0.6001 0.0015 18 6 6.3323 -0.6321 0.0014 19 7 4.1512 0.4721 0.0010 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.2192 3.6698 -0.0096 26 1 5.6845 3.9677 0.0003 27 1 7.8343 2.9422 0.4347 28 1 7.9916 1.1761 0.5901 29 1 11.2130 2.2338 -0.8476 30 1 6.5416 -0.9291 -1.0262 31 1 7.2691 -0.4167 0.5153 32 1 5.8138 -1.4416 0.5153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = -22.996994 kcal Electronic energy + Delta-G solvation = -14581.487713 eV Core-core repulsion = 12120.855717 eV Total energy + Delta-G solvation = -2460.631996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11176 -37.82892 -33.70780 -32.51231 -31.87864 -30.89715 -27.92060 -26.29669 -23.74471 -22.89738 -21.41711 -20.70372 -17.85998 -16.40042 -16.08903 -15.96569 -14.87578 -14.06982 -13.88047 -13.82262 -13.47997 -12.78542 -12.57838 -12.30340 -12.25371 -11.84529 -11.56709 -11.46661 -11.35768 -11.07960 -10.74987 -10.46929 -10.37187 -9.74955 -9.53753 -9.00957 -8.93363 -8.43884 -7.52303 -6.07833 -4.11921 1.78289 2.01465 3.28115 3.34912 3.38773 3.40159 4.33713 4.48652 4.78975 5.06415 5.13040 5.26463 5.38104 5.56288 5.57784 5.69260 5.78700 5.87062 6.00241 6.11104 6.15679 6.30591 6.35401 6.70101 6.79510 6.88813 7.14507 7.50472 7.65971 7.78764 7.87469 8.27100 8.50460 8.92717 9.52278 11.01528 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046555 B = 0.006242 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.292932 B = 4484.776044 C = 4551.379197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.069 3.931 3 O -0.316 6.316 4 C 0.290 3.710 5 C -0.198 4.198 6 C -0.050 4.050 7 C -0.118 4.118 8 C 0.057 3.943 9 C -0.511 4.511 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.156 3.844 18 C -0.096 4.096 19 N -0.543 5.543 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -2.890 1.913 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.007 4.007 3 O -0.225 6.225 4 C 0.111 3.889 5 C -0.218 4.218 6 C -0.076 4.076 7 C -0.120 4.120 8 C 0.019 3.981 9 C -0.549 4.549 10 H 0.073 0.927 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.020 3.980 18 C -0.153 4.153 19 N -0.267 5.267 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.174 -3.525 1.953 13.776 hybrid contribution 0.768 0.667 -1.039 1.454 sum -12.406 -2.858 0.914 12.764 Atomic orbital electron populations 1.21803 0.93678 1.02423 1.02967 1.22437 0.94038 0.82021 1.02208 1.86159 1.17681 1.29684 1.88983 1.19551 0.83310 0.90118 0.95877 1.20916 0.95774 0.95104 1.10028 1.21353 0.91547 0.99644 0.95009 1.21335 1.00440 0.92080 0.98134 1.18279 0.83511 0.98420 0.97841 1.21014 0.91796 1.50260 0.91815 0.92674 1.24978 0.96877 0.95125 0.97111 1.69945 1.02778 1.49655 1.30808 0.86568 0.78182 0.78338 0.84827 1.20612 1.21120 1.19838 1.20762 0.87731 0.95419 0.94071 1.20689 0.98307 0.93053 1.03240 1.67012 1.06422 1.33214 1.20037 0.91922 0.91894 0.90716 0.92051 0.92086 0.85285 0.84598 0.95383 0.94568 0.92794 0.90388 0.89415 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.07 0.94 6.03 37.16 0.22 1.16 16 3 O -0.32 -5.32 10.12 -18.73 -0.19 -5.51 16 4 C 0.29 5.48 7.49 -17.12 -0.13 5.36 16 5 C -0.20 -3.56 10.04 -39.28 -0.39 -3.95 16 6 C -0.05 -0.97 9.83 -39.31 -0.39 -1.36 16 7 C -0.12 -2.56 5.09 -104.47 -0.53 -3.09 16 8 C 0.06 1.40 4.61 -29.04 -0.13 1.27 16 9 C -0.51 -13.80 9.09 -34.44 -0.31 -14.11 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 13 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.16 3.22 6.78 -82.60 -0.56 2.66 16 18 C -0.10 -1.78 9.76 36.01 0.35 -1.43 16 19 N -0.54 -10.79 9.13 -9.55 -0.09 -10.87 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 24 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 26 H 0.14 2.41 8.06 -52.49 -0.42 1.98 16 27 H 0.03 0.72 8.06 -51.93 -0.42 0.31 16 28 H 0.04 0.92 6.16 -51.93 -0.32 0.60 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.69 6.01 -51.93 -0.31 1.38 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -29.42 277.17 -6.36 -35.78 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.39 Total: -1.78 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.59 Total: -13.06 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.65 Total: -35.68 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.19 Total: -5.51 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.42 -6.36 -35.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.782 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds