Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47030 * 2 1 4 4 C 1.35675 * 117.00248 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.68314 * 179.72716 * 4 3 2 6 6 C 1.38384 * 119.11112 * 179.75573 * 5 4 3 7 7 C 1.38826 * 118.48284 * 0.51069 * 6 5 4 8 8 C 1.50700 * 120.35693 * 179.70865 * 7 6 5 9 9 C 1.50694 * 109.47041 * 265.02296 * 8 7 6 10 10 H 1.08001 * 120.00591 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00003 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99801 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00034 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47020 * 90.00243 * 13 11 9 15 15 H 1.48504 * 109.46936 * 210.00276 * 13 11 9 16 16 H 1.48507 * 109.47152 * 330.00131 * 13 11 9 17 17 C 1.38048 * 119.28948 * 359.72773 * 7 6 5 18 18 C 1.50704 * 119.58253 * 179.97438 * 17 7 6 19 19 N 1.31963 * 120.83448 * 0.02569 * 17 7 6 20 20 H 1.08996 * 109.47279 * 300.00102 * 1 2 3 21 21 H 1.08999 * 109.47266 * 60.00156 * 1 2 3 22 22 H 1.09003 * 109.46579 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47781 * 239.99970 * 2 1 3 24 24 H 1.08999 * 109.47266 * 119.99844 * 2 1 3 25 25 H 1.08003 * 120.45041 * 0.02562 * 5 4 3 26 26 H 1.07999 * 120.75530 * 180.24165 * 6 5 4 27 27 H 1.09003 * 109.47080 * 25.02202 * 8 7 6 28 28 H 1.08996 * 109.47061 * 145.01970 * 8 7 6 29 29 H 0.97008 * 120.00104 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47690 * 270.02847 * 18 17 7 31 31 H 1.09002 * 109.46833 * 30.02675 * 18 17 7 32 32 H 1.09001 * 109.46962 * 150.02267 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5252 0.0005 5 6 3.8751 2.8118 -0.0052 6 6 5.2488 2.9795 0.0006 7 6 6.0538 1.8485 0.0011 8 6 7.5549 1.9822 0.0006 9 6 8.0658 1.9031 -1.4148 10 1 7.3730 1.7691 -2.2324 11 6 9.4179 2.0019 -1.6663 12 7 10.2617 2.1647 -0.6707 13 14 10.0512 1.9047 -3.4210 14 1 10.0949 3.2681 -4.0077 15 1 11.4168 1.3210 -3.4227 16 1 9.1455 1.0475 -4.2273 17 6 5.4646 0.6001 0.0015 18 6 6.3323 -0.6321 0.0014 19 7 4.1512 0.4721 0.0010 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.2192 3.6698 -0.0096 26 1 5.6845 3.9677 0.0003 27 1 7.8343 2.9422 0.4347 28 1 7.9916 1.1761 0.5901 29 1 11.2130 2.2338 -0.8476 30 1 6.5416 -0.9291 -1.0262 31 1 7.2691 -0.4167 0.5153 32 1 5.8138 -1.4416 0.5153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = -41.107378 kcal Electronic energy + Delta-G solvation = -14582.273038 eV Core-core repulsion = 12120.855717 eV Total energy + Delta-G solvation = -2461.417321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59334 -39.21378 -35.59096 -33.96663 -33.56772 -32.11483 -29.65622 -27.93719 -25.42217 -24.28347 -22.79490 -22.34625 -19.21704 -18.49589 -17.57530 -17.21887 -16.75340 -15.69831 -15.26777 -15.21148 -14.88368 -14.31365 -13.99902 -13.85229 -13.61235 -13.37116 -13.17508 -12.89844 -12.76819 -12.56943 -12.42722 -12.32712 -11.73777 -11.58147 -11.37998 -10.61817 -10.58244 -10.42816 -9.10938 -8.16345 -6.28411 0.26256 0.44798 1.41833 1.42842 1.53378 2.11997 2.41883 2.87493 3.14776 3.33395 4.03817 4.10810 4.13647 4.20390 4.22506 4.45599 4.49572 4.67644 4.80209 4.82399 4.92662 4.97390 5.06825 5.21327 5.24445 5.27051 5.42119 5.65241 5.77887 5.80426 6.20050 6.36991 6.82070 6.96685 7.39634 8.92096 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046555 B = 0.006242 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.292932 B = 4484.776044 C = 4551.379197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 O -0.317 6.317 4 C 0.287 3.713 5 C -0.191 4.191 6 C -0.051 4.051 7 C -0.147 4.147 8 C 0.069 3.931 9 C -0.521 4.521 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.926 5.926 13 Si 0.957 3.043 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.269 1.269 17 C 0.146 3.854 18 C -0.090 4.090 19 N -0.548 5.548 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.162 0.838 26 H 0.149 0.851 27 H 0.007 0.993 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 -3.005 1.183 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 O -0.225 6.225 4 C 0.108 3.892 5 C -0.212 4.212 6 C -0.076 4.076 7 C -0.149 4.149 8 C 0.031 3.969 9 C -0.559 4.559 10 H 0.066 0.934 11 C -0.186 4.186 12 N -0.566 5.566 13 Si 0.782 3.218 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.194 1.194 17 C 0.011 3.989 18 C -0.147 4.147 19 N -0.273 5.273 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.118 0.882 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.179 0.821 26 H 0.167 0.833 27 H 0.025 0.975 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.858 -3.644 1.225 15.347 hybrid contribution 1.159 0.691 -0.769 1.553 sum -13.698 -2.954 0.456 14.021 Atomic orbital electron populations 1.21811 0.90559 1.04232 1.03405 1.22741 0.96452 0.80482 1.01773 1.86184 1.16253 1.31634 1.88470 1.19906 0.84187 0.90361 0.94740 1.21197 0.95407 0.96003 1.08552 1.21531 0.92234 0.99556 0.94269 1.21147 0.98883 0.93683 1.01189 1.18001 0.85869 0.96557 0.96455 1.21249 0.92008 1.49941 0.92684 0.93381 1.25757 0.97106 0.94742 1.00998 1.70051 1.03111 1.50574 1.32840 0.85572 0.77666 0.78505 0.80073 1.19986 1.20530 1.19390 1.20926 0.88357 0.95561 0.94078 1.20636 0.97748 0.93244 1.03107 1.67057 1.05902 1.33785 1.20537 0.91364 0.91543 0.88232 0.92691 0.92354 0.82083 0.83334 0.97465 0.96106 0.92592 0.90720 0.90722 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.06 1.54 6.03 71.98 0.43 1.97 16 3 O -0.32 -9.97 10.12 -89.92 -0.91 -10.88 16 4 C 0.29 10.37 7.49 84.79 0.63 11.01 16 5 C -0.19 -6.50 10.04 22.47 0.23 -6.28 16 6 C -0.05 -1.93 9.83 22.45 0.22 -1.71 16 7 C -0.15 -6.44 5.09 -19.77 -0.10 -6.54 16 8 C 0.07 3.49 4.61 29.10 0.13 3.62 16 9 C -0.52 -28.55 9.09 25.60 0.23 -28.32 16 10 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 11 C 0.01 0.69 5.46 84.66 0.46 1.16 16 12 N -0.93 -53.71 13.29 21.45 0.28 -53.42 16 13 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 C 0.15 6.02 6.78 42.49 0.29 6.31 16 18 C -0.09 -3.37 9.76 71.24 0.70 -2.68 16 19 N -0.55 -21.24 9.13 -297.00 -2.71 -23.95 16 20 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 24 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 25 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 26 H 0.15 5.15 8.06 -2.91 -0.02 5.13 16 27 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 28 H 0.02 1.11 6.16 -2.39 -0.01 1.09 16 29 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.07 2.96 6.01 -2.39 -0.01 2.95 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -62.14 277.17 3.75 -58.38 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.10 Total: 7.73 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.97 Total: -23.15 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.43 Total: -77.37 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.91 Total: -10.88 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -62.14 3.75 -58.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.277 kcal (2) G-P(sol) polarization free energy of solvation -62.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds