Wall clock time and date at job start Sun Mar 29 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47181 * 2 1 4 4 C 1.42906 * 113.99828 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46702 * 179.97438 * 4 3 2 6 6 C 1.38223 * 120.41684 * 269.71755 * 5 4 3 7 7 N 1.31858 * 120.75890 * 179.77857 * 6 5 4 8 8 C 1.31889 * 121.72667 * 0.48991 * 7 6 5 9 9 C 1.38182 * 120.76529 * 359.77332 * 8 7 6 10 10 C 1.50695 * 120.41837 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47620 * 270.02642 * 10 9 8 12 12 H 1.08005 * 119.99535 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00203 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99655 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46973 * 60.00180 * 15 13 11 17 17 H 1.48500 * 109.46804 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47021 * 299.99893 * 15 13 11 19 19 C 1.38624 * 120.41738 * 90.00115 * 5 4 3 20 20 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47176 * 300.00297 * 1 2 3 22 22 H 1.08998 * 109.46780 * 60.00156 * 1 2 3 23 23 H 1.09000 * 109.47628 * 239.99575 * 2 1 3 24 24 H 1.09002 * 109.47235 * 119.99978 * 2 1 3 25 25 H 1.09000 * 109.46890 * 59.99811 * 4 3 2 26 26 H 1.09000 * 109.47141 * 299.99454 * 4 3 2 27 27 H 1.08001 * 119.62126 * 0.02769 * 6 5 4 28 28 H 1.07995 * 119.61468 * 179.75259 * 8 7 6 29 29 H 1.09007 * 109.46784 * 30.02751 * 10 9 8 30 30 H 1.09002 * 109.47318 * 150.02294 * 10 9 8 31 31 H 0.97006 * 119.99929 * 180.02562 * 14 13 11 32 32 H 1.08000 * 120.79220 * 359.95143 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 -0.0012 6 6 4.0051 3.5904 -1.1934 7 7 4.3409 4.8655 -1.2018 8 6 4.5214 5.5426 -0.0845 9 6 4.3587 4.9335 1.1452 10 6 4.5675 5.7144 2.4170 11 6 6.0099 5.6084 2.8406 12 1 6.7059 5.0333 2.2478 13 6 6.4410 6.2454 3.9849 14 7 5.5936 6.9460 4.7063 15 14 8.2287 6.1133 4.5103 16 1 9.1005 6.6652 3.4422 17 1 8.4344 6.8830 5.7635 18 1 8.5723 4.6875 4.7424 19 6 4.0009 3.5946 1.1940 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.8333 0.9766 -0.8908 26 1 3.8341 0.9764 0.8892 27 1 3.8697 3.0679 -2.1289 28 1 4.8000 6.5849 -0.1311 29 1 4.3149 6.7610 2.2463 30 1 3.9278 5.3095 3.2012 31 1 5.8969 7.3945 5.5112 32 1 3.8664 3.0925 2.1407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:42 Heat of formation + Delta-G solvation = -31.316134 kcal Electronic energy + Delta-G solvation = -14211.344993 eV Core-core repulsion = 11750.352252 eV Total energy + Delta-G solvation = -2460.992741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.69918 -37.83418 -33.83811 -32.82728 -31.76229 -30.70659 -27.35438 -25.96980 -23.64789 -22.85406 -22.25847 -20.24401 -16.69901 -16.45672 -16.39989 -16.25709 -15.42770 -15.03318 -14.50035 -13.32368 -13.27230 -12.92763 -12.63598 -12.46607 -12.33016 -12.16696 -11.57759 -11.51332 -11.28372 -11.13978 -10.76583 -10.56960 -9.88577 -9.66014 -9.62962 -9.01600 -8.78437 -8.46491 -8.07580 -6.10280 -4.15142 1.62665 1.98747 3.28745 3.33193 3.36189 3.75963 4.36121 4.56696 4.92048 4.93787 5.05748 5.14302 5.20268 5.24724 5.27714 5.38862 5.59343 5.60907 5.73420 5.78251 5.99131 6.00375 6.19839 6.47662 6.77250 6.88710 7.19003 7.33606 7.48333 7.62857 7.84381 8.22381 8.56339 8.89291 9.49299 10.99552 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.005842 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.848210 B = 4791.337947 C = 5123.046694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.383 6.383 4 C 0.114 3.886 5 C -0.150 4.150 6 C 0.085 3.915 7 N -0.491 5.491 8 C 0.094 3.906 9 C -0.083 4.083 10 C 0.052 3.948 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.062 4.062 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -11.840 -7.977 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.037 3.963 5 C -0.152 4.152 6 C -0.073 4.073 7 N -0.199 5.199 8 C -0.063 4.063 9 C -0.085 4.085 10 C 0.015 3.985 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.088 4.088 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.170 0.830 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.983 -11.133 -8.619 15.297 hybrid contribution 1.074 -0.736 1.231 1.792 sum -4.909 -11.869 -7.388 14.817 Atomic orbital electron populations 1.21738 0.93887 1.01963 1.03258 1.22447 0.95563 0.84199 0.99913 1.88007 1.20920 1.25958 1.95377 1.21166 0.81326 0.93158 1.00621 1.20454 1.04008 0.95743 0.94996 1.22314 0.97687 0.90682 0.96573 1.67624 1.12245 1.08195 1.31829 1.22719 0.96158 1.00109 0.87268 1.21678 0.93383 0.94634 0.98816 1.18305 0.97571 0.94794 0.87843 1.20986 0.93655 1.32045 1.08821 0.92568 1.24996 0.97822 0.95012 0.96286 1.69941 1.34635 1.32445 1.16026 0.86575 0.84804 0.78231 0.77967 1.20077 1.21139 1.20183 1.21407 0.95870 0.94160 0.97399 0.91302 0.91767 0.91896 0.93574 0.93451 0.92614 0.92438 0.83995 0.82966 0.94829 0.95032 0.92651 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.58 6.66 37.16 0.25 0.83 16 3 O -0.38 -5.52 10.33 -35.23 -0.36 -5.89 16 4 C 0.11 1.57 6.09 36.01 0.22 1.79 16 5 C -0.15 -2.58 5.53 -104.48 -0.58 -3.16 16 6 C 0.09 1.48 10.86 -17.55 -0.19 1.29 16 7 N -0.49 -9.62 10.36 -13.25 -0.14 -9.76 16 8 C 0.09 1.93 10.86 -17.55 -0.19 1.74 16 9 C -0.08 -1.82 5.09 -104.48 -0.53 -2.35 16 10 C 0.05 1.32 5.13 -29.04 -0.15 1.17 16 11 C -0.52 -14.22 9.09 -34.44 -0.31 -14.54 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 15 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.06 -1.23 9.55 -39.28 -0.37 -1.60 16 20 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 29 H 0.03 0.88 8.09 -51.92 -0.42 0.46 16 30 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 282.74 15.07 4.26 4.26 Total: -1.00 -30.22 282.74 -6.71 -36.92 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.60 Total: -2.34 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.58 Total: -14.23 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.60 Total: -34.95 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.36 Total: -5.89 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.22 -6.71 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.605 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds