Wall clock time and date at job start Sun Mar 29 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47181 * 2 1 4 4 C 1.42906 * 113.99828 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46702 * 179.97438 * 4 3 2 6 6 C 1.38223 * 120.41684 * 269.71755 * 5 4 3 7 7 N 1.31858 * 120.75890 * 179.77857 * 6 5 4 8 8 C 1.31889 * 121.72667 * 0.48991 * 7 6 5 9 9 C 1.38182 * 120.76529 * 359.77332 * 8 7 6 10 10 C 1.50695 * 120.41837 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47620 * 270.02642 * 10 9 8 12 12 H 1.08005 * 119.99535 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00203 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99655 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99878 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46973 * 60.00180 * 15 13 11 17 17 H 1.48500 * 109.46804 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47021 * 299.99893 * 15 13 11 19 19 C 1.38624 * 120.41738 * 90.00115 * 5 4 3 20 20 H 1.09005 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47176 * 300.00297 * 1 2 3 22 22 H 1.08998 * 109.46780 * 60.00156 * 1 2 3 23 23 H 1.09000 * 109.47628 * 239.99575 * 2 1 3 24 24 H 1.09002 * 109.47235 * 119.99978 * 2 1 3 25 25 H 1.09000 * 109.46890 * 59.99811 * 4 3 2 26 26 H 1.09000 * 109.47141 * 299.99454 * 4 3 2 27 27 H 1.08001 * 119.62126 * 0.02769 * 6 5 4 28 28 H 1.07995 * 119.61468 * 179.75259 * 8 7 6 29 29 H 1.09007 * 109.46784 * 30.02751 * 10 9 8 30 30 H 1.09002 * 109.47318 * 150.02294 * 10 9 8 31 31 H 0.97006 * 119.99929 * 180.02562 * 14 13 11 32 32 H 1.08000 * 120.79220 * 359.95143 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9161 -0.0012 6 6 4.0051 3.5904 -1.1934 7 7 4.3409 4.8655 -1.2018 8 6 4.5214 5.5426 -0.0845 9 6 4.3587 4.9335 1.1452 10 6 4.5675 5.7144 2.4170 11 6 6.0099 5.6084 2.8406 12 1 6.7059 5.0333 2.2478 13 6 6.4410 6.2454 3.9849 14 7 5.5936 6.9460 4.7063 15 14 8.2287 6.1133 4.5103 16 1 9.1005 6.6652 3.4422 17 1 8.4344 6.8830 5.7635 18 1 8.5723 4.6875 4.7424 19 6 4.0009 3.5946 1.1940 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.8333 0.9766 -0.8908 26 1 3.8341 0.9764 0.8892 27 1 3.8697 3.0679 -2.1289 28 1 4.8000 6.5849 -0.1311 29 1 4.3149 6.7610 2.2463 30 1 3.9278 5.3095 3.2012 31 1 5.8969 7.3945 5.5112 32 1 3.8664 3.0925 2.1407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:42 Heat of formation + Delta-G solvation = -49.739906 kcal Electronic energy + Delta-G solvation = -14212.143908 eV Core-core repulsion = 11750.352252 eV Total energy + Delta-G solvation = -2461.791655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17911 -38.86181 -35.77820 -34.08629 -33.60116 -31.68438 -29.25840 -27.19752 -25.55769 -23.80858 -23.62838 -21.82734 -18.54603 -17.89691 -17.66907 -17.55489 -16.70210 -16.53184 -16.00570 -14.90209 -14.54230 -14.18927 -14.15928 -13.91272 -13.73862 -13.42949 -13.23287 -13.04495 -12.62465 -12.45396 -12.22062 -12.11929 -11.70668 -11.66667 -10.66017 -10.56795 -10.53526 -10.29009 -9.70389 -8.22912 -6.36374 0.15307 0.43236 1.40345 1.42492 1.50918 2.38461 2.66620 3.08919 3.15374 3.59537 3.87923 3.94430 4.09537 4.18586 4.22197 4.33145 4.46540 4.51925 4.54543 4.68990 4.88951 4.93949 5.06313 5.17047 5.28928 5.29612 5.31188 5.69107 5.71264 5.83368 6.12459 6.28139 6.74765 7.04647 7.32665 8.86819 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.005842 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.848210 B = 4791.337947 C = 5123.046694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.410 6.410 4 C 0.116 3.884 5 C -0.141 4.141 6 C 0.091 3.909 7 N -0.500 5.500 8 C 0.084 3.916 9 C -0.109 4.109 10 C 0.063 3.937 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.267 1.267 19 C -0.071 4.071 20 H 0.094 0.906 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.182 0.818 28 H 0.153 0.847 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.267 0.733 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -13.993 -9.205 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.331 6.331 4 C 0.040 3.960 5 C -0.143 4.143 6 C -0.067 4.067 7 N -0.208 5.208 8 C -0.071 4.071 9 C -0.111 4.111 10 C 0.025 3.975 11 C -0.571 4.571 12 H 0.072 0.928 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.192 1.192 19 C -0.097 4.097 20 H 0.112 0.888 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.199 0.801 28 H 0.170 0.830 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.428 -13.292 -9.855 17.414 hybrid contribution 0.802 -0.158 1.544 1.747 sum -4.625 -13.449 -8.311 16.473 Atomic orbital electron populations 1.21778 0.93239 1.03388 1.02411 1.22710 0.96147 0.82613 1.01335 1.87961 1.20949 1.28510 1.95669 1.21205 0.81581 0.90596 1.02659 1.20801 1.02164 0.97642 0.93724 1.23012 0.95479 0.89943 0.98266 1.67685 1.12734 1.09422 1.30948 1.22668 0.96766 1.00416 0.87274 1.21372 0.96425 0.95668 0.97632 1.18022 0.96366 0.93960 0.89157 1.21295 0.94689 1.31998 1.09088 0.92781 1.25887 1.02397 0.94471 0.96239 1.70063 1.36804 1.33288 1.16529 0.85497 0.79231 0.78619 0.77713 1.19358 1.20497 1.19235 1.21519 0.95865 0.93470 0.98801 0.88758 0.93042 0.92320 0.91496 0.92589 0.89427 0.91574 0.80068 0.83017 0.97050 0.97334 0.92431 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.86 6.66 71.98 0.48 1.34 16 3 O -0.41 -10.77 10.33 -148.98 -1.54 -12.31 16 4 C 0.12 2.82 6.09 71.24 0.43 3.25 16 5 C -0.14 -4.58 5.53 -19.77 -0.11 -4.69 16 6 C 0.09 2.91 10.86 84.69 0.92 3.83 16 7 N -0.50 -18.97 10.36 -195.84 -2.03 -21.00 16 8 C 0.08 3.52 10.86 84.67 0.92 4.44 16 9 C -0.11 -4.89 5.09 -19.77 -0.10 -4.99 16 10 C 0.06 3.32 5.13 29.10 0.15 3.47 16 11 C -0.53 -30.05 9.09 25.60 0.23 -29.81 16 12 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 13 C 0.01 0.50 5.46 84.66 0.46 0.96 16 14 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 15 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C -0.07 -2.77 9.55 22.47 0.21 -2.55 16 20 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 26 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 27 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.15 6.14 8.06 -2.91 -0.02 6.11 16 29 H 0.01 0.63 8.09 -2.38 -0.02 0.61 16 30 H 0.01 0.47 8.10 -2.39 -0.02 0.45 16 31 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 32 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -65.46 282.74 4.17 -61.30 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.08 Total: 7.63 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 4.34 Total: -26.43 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.74 Total: -75.89 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.54 Total: -12.31 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.46 4.17 -61.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.556 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds