Wall clock time and date at job start Sun Mar 29 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.35677 * 116.99668 * 150.00060 * 4 2 1 6 6 C 1.38919 * 119.68049 * 179.97438 * 5 4 2 7 7 C 1.38383 * 119.11063 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.75454 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46956 * 90.00489 * 8 7 6 10 10 H 1.08000 * 119.99961 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00100 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99862 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46917 * 90.00270 * 13 11 9 15 15 H 1.48497 * 109.47084 * 210.00405 * 13 11 9 16 16 H 1.48495 * 109.46995 * 330.00453 * 13 11 9 17 17 C 1.38824 * 118.48242 * 0.02562 * 7 6 5 18 18 C 1.38041 * 119.29224 * 359.97438 * 17 7 6 19 19 N 1.31968 * 120.83299 * 359.74540 * 18 17 7 20 20 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 21 21 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 24 24 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 25 25 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 26 26 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 27 27 H 1.08000 * 120.44774 * 359.97438 * 6 5 4 28 28 H 1.09004 * 109.46826 * 209.99472 * 8 7 6 29 29 H 1.08995 * 109.47411 * 329.99930 * 8 7 6 30 30 H 0.96997 * 120.00105 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.35185 * 179.97438 * 17 7 6 32 32 H 1.08001 * 119.58442 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1987 -1.3130 1.0653 6 6 3.7146 -1.9855 2.1660 7 6 4.9314 -2.6341 2.0491 8 6 5.5256 -3.3744 3.2196 9 6 5.0534 -4.8054 3.2010 10 1 4.3891 -5.1447 2.4200 11 6 5.4686 -5.6812 4.1816 12 7 5.0561 -6.9298 4.1657 13 14 6.6171 -5.0941 5.5329 14 1 5.8172 -4.5838 6.6753 15 1 7.4648 -6.2251 5.9881 16 1 7.4821 -4.0065 5.0094 17 6 5.5927 -2.5862 0.8294 18 6 5.0209 -1.8989 -0.2223 19 7 3.8561 -1.2947 -0.0820 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1300 1.4424 0.0005 27 1 3.1732 -2.0020 3.1004 28 1 6.6132 -3.3498 3.1507 29 1 5.2095 -2.8994 4.1483 30 1 5.3485 -7.5460 4.8553 31 1 6.5444 -3.0814 0.7048 32 1 5.5314 -1.8583 -1.1732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:17 Heat of formation + Delta-G solvation = -19.282579 kcal Electronic energy + Delta-G solvation = -14499.323901 eV Core-core repulsion = 12038.852974 eV Total energy + Delta-G solvation = -2460.470927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17067 -37.93868 -33.99439 -33.09082 -32.03492 -29.58637 -28.34795 -27.25239 -23.78829 -22.80017 -21.86974 -20.09665 -17.55450 -16.85756 -16.29432 -15.38282 -15.29243 -14.35765 -14.33053 -14.11695 -13.47404 -12.95878 -12.85628 -12.34568 -12.31844 -12.04394 -11.87330 -11.78673 -11.23897 -10.84395 -10.81120 -10.56643 -10.46790 -10.18137 -9.54337 -9.04830 -8.65591 -8.62682 -7.98075 -6.13931 -4.14700 1.74166 1.95212 3.24954 3.32620 3.34437 3.35781 4.35481 4.36445 4.71624 4.92648 5.03411 5.17471 5.28198 5.47054 5.51047 5.56937 5.71581 5.72620 5.82579 5.86997 6.05756 6.13004 6.19427 6.26064 6.57882 6.72356 6.85750 7.07586 7.35469 7.57709 7.73137 8.34777 8.39951 8.89734 9.44784 10.98774 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044394 B = 0.006180 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.567941 B = 4529.370328 C = 4710.581065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.166 4.166 4 O -0.306 6.306 5 C 0.313 3.687 6 C -0.192 4.192 7 C 0.043 3.957 8 C 0.014 3.986 9 C -0.517 4.517 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.896 5.896 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.208 4.208 18 C 0.126 3.874 19 N -0.559 5.559 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.136 0.864 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.266 0.734 31 H 0.133 0.867 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 13.586 -7.268 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.224 4.224 4 O -0.214 6.214 5 C 0.135 3.865 6 C -0.213 4.213 7 C 0.036 3.964 8 C -0.023 4.023 9 C -0.555 4.555 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.534 5.534 13 Si 0.705 3.295 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.229 4.229 18 C -0.028 4.028 19 N -0.284 5.284 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.105 0.895 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.933 13.882 -7.657 16.334 hybrid contribution 0.946 -0.325 1.220 1.577 sum -2.986 13.556 -6.437 15.301 Atomic orbital electron populations 1.21897 0.93406 1.02923 1.02505 1.22218 0.94051 0.92545 0.88728 1.22197 1.02161 0.95979 1.02029 1.86283 1.32376 1.64803 1.37938 1.19731 0.85849 0.90820 0.90108 1.20968 0.98135 1.03149 0.99009 1.20520 0.91260 0.88494 0.96173 1.18865 0.96531 0.96008 0.90926 1.20825 1.30427 0.91335 1.12912 0.90761 1.24974 0.95830 0.94672 0.97542 1.69889 1.44728 1.04139 1.34678 0.86796 0.81444 0.78735 0.82511 1.20022 1.21108 1.18881 1.21890 1.03133 1.03899 0.93969 1.22186 0.89877 0.92417 0.98349 1.67101 1.11015 1.25697 1.24584 0.91836 0.90907 0.91834 0.89466 0.91566 0.92265 0.92030 0.84659 0.94676 0.95230 0.92437 0.84938 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.56 37.16 0.36 -1.26 16 2 C 0.08 1.10 3.11 -26.73 -0.08 1.02 16 3 C -0.17 -1.94 9.53 37.16 0.35 -1.59 16 4 O -0.31 -5.26 9.76 -18.73 -0.18 -5.44 16 5 C 0.31 5.90 7.45 -17.13 -0.13 5.78 16 6 C -0.19 -3.88 9.75 -39.28 -0.38 -4.27 16 7 C 0.04 0.90 5.10 -104.35 -0.53 0.37 16 8 C 0.01 0.32 4.22 -29.03 -0.12 0.20 16 9 C -0.52 -14.47 9.65 -34.44 -0.33 -14.81 16 10 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 13 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 17 C -0.21 -3.85 9.81 -39.44 -0.39 -4.24 16 18 C 0.13 2.09 11.18 -17.57 -0.20 1.90 16 19 N -0.56 -9.97 8.64 -13.33 -0.12 -10.08 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.09 1.25 6.98 -51.93 -0.36 0.89 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.14 2.66 8.06 -52.49 -0.42 2.24 16 28 H 0.04 0.80 7.16 -51.93 -0.37 0.43 16 29 H 0.03 0.68 7.53 -51.93 -0.39 0.28 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -30.58 276.41 -6.10 -36.68 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.52 Total: -0.27 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.55 Total: -14.95 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.66 Total: -36.44 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.18 Total: -5.44 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.58 -6.10 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.395 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds