Wall clock time and date at job start Sun Mar 29 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.35677 * 116.99668 * 150.00060 * 4 2 1 6 6 C 1.38919 * 119.68049 * 179.97438 * 5 4 2 7 7 C 1.38383 * 119.11063 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.75454 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46956 * 90.00489 * 8 7 6 10 10 H 1.08000 * 119.99961 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00100 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99862 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46917 * 90.00270 * 13 11 9 15 15 H 1.48497 * 109.47084 * 210.00405 * 13 11 9 16 16 H 1.48495 * 109.46995 * 330.00453 * 13 11 9 17 17 C 1.38824 * 118.48242 * 0.02562 * 7 6 5 18 18 C 1.38041 * 119.29224 * 359.97438 * 17 7 6 19 19 N 1.31968 * 120.83299 * 359.74540 * 18 17 7 20 20 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 21 21 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 22 22 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 24 24 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 25 25 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 26 26 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 27 27 H 1.08000 * 120.44774 * 359.97438 * 6 5 4 28 28 H 1.09004 * 109.46826 * 209.99472 * 8 7 6 29 29 H 1.08995 * 109.47411 * 329.99930 * 8 7 6 30 30 H 0.96997 * 120.00105 * 179.97438 * 12 11 9 31 31 H 1.08002 * 120.35185 * 179.97438 * 17 7 6 32 32 H 1.08001 * 119.58442 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1987 -1.3130 1.0653 6 6 3.7146 -1.9855 2.1660 7 6 4.9314 -2.6341 2.0491 8 6 5.5256 -3.3744 3.2196 9 6 5.0534 -4.8054 3.2010 10 1 4.3891 -5.1447 2.4200 11 6 5.4686 -5.6812 4.1816 12 7 5.0561 -6.9298 4.1657 13 14 6.6171 -5.0941 5.5329 14 1 5.8172 -4.5838 6.6753 15 1 7.4648 -6.2251 5.9881 16 1 7.4821 -4.0065 5.0094 17 6 5.5927 -2.5862 0.8294 18 6 5.0209 -1.8989 -0.2223 19 7 3.8561 -1.2947 -0.0820 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6768 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1300 1.4424 0.0005 27 1 3.1732 -2.0020 3.1004 28 1 6.6132 -3.3498 3.1507 29 1 5.2095 -2.8994 4.1483 30 1 5.3485 -7.5460 4.8553 31 1 6.5444 -3.0814 0.7048 32 1 5.5314 -1.8583 -1.1732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:17 Heat of formation + Delta-G solvation = -39.272016 kcal Electronic energy + Delta-G solvation = -14500.190708 eV Core-core repulsion = 12038.852974 eV Total energy + Delta-G solvation = -2461.337734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.56417 -39.26249 -35.80387 -34.18848 -33.96986 -30.98171 -30.20060 -28.14426 -25.56062 -24.23523 -23.33088 -21.43855 -19.02250 -18.93242 -17.68145 -16.81946 -16.61898 -16.26870 -15.60740 -15.41541 -14.75470 -14.71540 -14.13540 -13.92935 -13.69758 -13.21766 -13.16014 -12.84454 -12.83393 -12.57426 -12.32569 -12.02569 -11.81234 -11.67898 -11.66713 -10.81406 -10.49200 -10.29347 -9.38395 -8.32239 -6.39276 0.29964 0.42692 1.38503 1.39559 1.51403 2.09902 2.34436 2.90525 3.02410 3.42353 3.94352 4.04366 4.07607 4.17571 4.25123 4.32860 4.41543 4.70924 4.79848 4.84639 4.86067 4.90678 4.99089 5.07109 5.08552 5.23578 5.28280 5.48223 5.63419 5.72296 6.19840 6.38312 6.66222 6.92680 7.24406 8.84304 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044394 B = 0.006180 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.567941 B = 4529.370328 C = 4710.581065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 C -0.160 4.160 4 O -0.318 6.318 5 C 0.311 3.689 6 C -0.213 4.213 7 C 0.018 3.982 8 C 0.020 3.980 9 C -0.525 4.525 10 H 0.026 0.974 11 C 0.011 3.989 12 N -0.947 5.947 13 Si 0.952 3.048 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.240 1.240 17 C -0.217 4.217 18 C 0.138 3.862 19 N -0.556 5.556 20 H 0.067 0.933 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.129 0.871 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.269 0.731 31 H 0.147 0.853 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 15.643 -7.891 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 C -0.217 4.217 4 O -0.227 6.227 5 C 0.133 3.867 6 C -0.234 4.234 7 C 0.011 3.989 8 C -0.017 4.017 9 C -0.563 4.563 10 H 0.044 0.956 11 C -0.186 4.186 12 N -0.587 5.587 13 Si 0.775 3.225 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.163 1.163 17 C -0.237 4.237 18 C -0.017 4.017 19 N -0.281 5.281 20 H 0.086 0.914 21 H 0.121 0.879 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.147 0.853 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.237 15.966 -8.293 18.281 hybrid contribution 0.612 -0.952 1.272 1.703 sum -2.625 15.014 -7.021 16.781 Atomic orbital electron populations 1.21922 0.91224 1.02903 1.04196 1.22605 0.95765 0.93164 0.87065 1.22158 1.01038 0.94871 1.03632 1.86273 1.31604 1.64822 1.39990 1.19760 0.86410 0.90554 0.89943 1.20989 0.98386 1.04376 0.99622 1.20447 0.92207 0.89656 0.96639 1.18715 0.97152 0.93365 0.92503 1.21027 1.29560 0.94055 1.11628 0.95577 1.25975 0.97723 0.94539 1.00403 1.70049 1.46708 1.05819 1.36131 0.85630 0.79238 0.78858 0.78809 1.19156 1.20717 1.16349 1.22112 1.03779 1.04311 0.93484 1.22867 0.89127 0.90289 0.99384 1.67260 1.11346 1.25636 1.23866 0.91417 0.87906 0.92736 0.90313 0.88738 0.91880 0.93679 0.85329 0.93457 0.94654 0.92186 0.83502 0.78834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.56 71.98 0.69 -2.15 16 2 C 0.07 1.78 3.11 30.60 0.10 1.88 16 3 C -0.16 -3.38 9.53 71.98 0.69 -2.70 16 4 O -0.32 -10.83 9.76 -89.95 -0.88 -11.71 16 5 C 0.31 11.65 7.45 84.79 0.63 12.29 16 6 C -0.21 -8.75 9.75 22.47 0.22 -8.53 16 7 C 0.02 0.76 5.10 -19.69 -0.10 0.66 16 8 C 0.02 0.92 4.22 29.10 0.12 1.05 16 9 C -0.52 -30.19 9.65 25.60 0.25 -29.94 16 10 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 11 C 0.01 0.64 5.47 84.66 0.46 1.11 16 12 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 13 Si 0.95 42.86 27.47 68.60 1.88 44.75 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 17 C -0.22 -7.74 9.81 22.36 0.22 -7.53 16 18 C 0.14 4.26 11.18 84.63 0.95 5.21 16 19 N -0.56 -18.98 8.64 -308.96 -2.67 -21.65 16 20 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.08 2.14 6.98 -2.39 -0.02 2.13 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.13 5.26 8.06 -2.91 -0.02 5.24 16 28 H 0.05 2.08 7.16 -2.39 -0.02 2.06 16 29 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.15 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.19 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -67.77 276.41 3.89 -63.89 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.03 Total: 12.06 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.22 Total: -28.66 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.37 Total: -80.31 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.88 Total: -11.71 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.75 kcal Total: -67.77 3.89 -63.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.615 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds