Wall clock time and date at job start Sun Mar 29 2020 22:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47368 * 2 1 4 4 O 1.42901 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.35677 * 116.99404 * 180.02562 * 4 3 2 6 6 C 1.38925 * 119.68043 * 179.97438 * 5 4 3 7 7 C 1.38381 * 119.10900 * 180.02562 * 6 5 4 8 8 C 1.38830 * 118.48403 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.34988 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47352 * 269.97452 * 9 8 7 11 11 H 1.07999 * 119.99391 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00052 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99966 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47117 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47209 * 119.99939 * 14 12 10 17 17 H 1.48497 * 109.47273 * 240.00301 * 14 12 10 18 18 C 1.38037 * 119.29315 * 359.97438 * 8 7 6 19 19 N 1.31964 * 120.83403 * 359.97438 * 18 8 7 20 20 H 1.08991 * 109.47185 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46772 * 299.99860 * 1 2 3 22 22 H 1.09000 * 109.46838 * 59.99975 * 1 2 3 23 23 H 1.09004 * 109.47187 * 239.99944 * 2 1 3 24 24 H 1.09005 * 109.47255 * 120.00226 * 2 1 3 25 25 H 1.08999 * 109.47060 * 60.00316 * 3 2 1 26 26 H 1.08997 * 109.46661 * 299.99868 * 3 2 1 27 27 H 1.08001 * 120.44570 * 359.97438 * 6 5 4 28 28 H 1.08005 * 120.75686 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47110 * 29.97938 * 9 8 7 30 30 H 1.09006 * 109.46827 * 149.98012 * 9 8 7 31 31 H 0.97005 * 119.99899 * 179.97438 * 13 12 10 32 32 H 1.08004 * 119.58455 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0850 2.6513 -0.0001 6 6 5.4728 2.7163 -0.0001 7 6 6.0886 3.9555 0.0009 8 6 5.2906 5.0915 0.0024 9 6 5.9170 6.4622 0.0030 10 6 6.1264 6.9183 1.4240 11 1 5.8354 6.2792 2.2445 12 6 6.6895 8.1512 1.6764 13 7 7.0434 8.9294 0.6771 14 14 6.9497 8.7162 3.4377 15 1 6.4705 7.6649 4.3708 16 1 8.3955 8.9631 3.6699 17 1 6.1894 9.9699 3.6729 18 6 3.9173 4.9521 0.0023 19 7 3.3588 3.7565 0.0003 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 6.0630 1.8118 -0.0001 28 1 7.1656 4.0370 0.0013 29 1 6.8772 6.4230 -0.5113 30 1 5.2583 7.1629 -0.5101 31 1 7.4392 9.7971 0.8547 32 1 3.2919 5.8327 0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058438.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:21 Heat of formation + Delta-G solvation = -45.325157 kcal Electronic energy + Delta-G solvation = -14165.607922 eV Core-core repulsion = 11704.007704 eV Total energy + Delta-G solvation = -2461.600217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50666 -39.13235 -35.63246 -34.76089 -33.56817 -32.41180 -28.95630 -27.38644 -25.32211 -24.43372 -22.51071 -22.30407 -19.36062 -18.51003 -17.78779 -17.36132 -16.76491 -15.71063 -15.44350 -15.40708 -15.22077 -14.50505 -14.04275 -13.83666 -13.62801 -13.34419 -13.26417 -12.94602 -12.63419 -12.47726 -12.29719 -11.98077 -11.69100 -11.63671 -11.41171 -10.69006 -10.64636 -10.45667 -9.21548 -8.19464 -6.32581 0.27093 0.43282 1.40536 1.42169 1.54448 2.08124 2.40495 2.90787 3.11796 3.42129 3.96925 3.98518 4.13829 4.19306 4.22944 4.33867 4.47159 4.57743 4.68232 4.75896 4.85067 5.09675 5.13761 5.19053 5.23861 5.32857 5.35985 5.60107 5.73950 5.77433 6.16329 6.34097 6.79372 6.92201 7.36386 8.89414 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051042 B = 0.005132 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.432962 B = 5454.273689 C = 5616.235844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.067 3.933 4 O -0.316 6.316 5 C 0.282 3.718 6 C -0.182 4.182 7 C -0.049 4.049 8 C -0.139 4.139 9 C 0.066 3.934 10 C -0.529 4.529 11 H 0.052 0.948 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.962 3.038 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.120 3.880 19 N -0.548 5.548 20 H 0.079 0.921 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.163 0.837 28 H 0.150 0.850 29 H 0.013 0.987 30 H 0.011 0.989 31 H 0.266 0.734 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 -15.124 -1.082 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.008 4.008 4 O -0.225 6.225 5 C 0.103 3.897 6 C -0.202 4.202 7 C -0.075 4.075 8 C -0.142 4.142 9 C 0.029 3.971 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.787 3.213 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.034 4.034 19 N -0.271 5.271 20 H 0.098 0.902 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.181 0.819 28 H 0.167 0.833 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.997 -15.318 -1.125 17.800 hybrid contribution 0.983 1.056 0.697 1.602 sum -8.014 -14.262 -0.428 16.365 Atomic orbital electron populations 1.21673 0.92859 1.03305 1.02430 1.21532 0.97205 0.93099 1.03698 1.22817 0.76777 0.99479 1.01742 1.86160 1.23597 1.24218 1.88483 1.19968 0.89976 0.84728 0.95017 1.21240 0.91728 0.99704 1.07495 1.21529 1.01251 0.90552 0.94156 1.21244 0.94994 0.97880 1.00051 1.17966 0.94868 0.87931 0.96354 1.21398 1.40825 1.02052 0.92465 0.92962 1.25842 0.95034 0.96661 1.01453 1.70067 1.42838 1.10936 1.32834 0.85437 0.78021 0.78221 0.79606 1.19260 1.20138 1.20277 1.22301 0.92737 0.93372 0.95018 1.67255 1.41284 0.98929 1.19673 0.90233 0.92380 0.92219 0.90583 0.90771 0.92714 0.92418 0.81902 0.83259 0.96906 0.97068 0.92521 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -2.15 6.30 30.60 0.19 -1.95 16 3 C 0.07 1.72 5.31 71.98 0.38 2.10 16 4 O -0.32 -9.84 10.12 -89.95 -0.91 -10.75 16 5 C 0.28 9.99 7.49 84.80 0.63 10.63 16 6 C -0.18 -5.99 10.04 22.47 0.23 -5.76 16 7 C -0.05 -1.84 9.85 22.45 0.22 -1.61 16 8 C -0.14 -6.00 5.09 -19.77 -0.10 -6.10 16 9 C 0.07 3.40 5.13 29.10 0.15 3.55 16 10 C -0.53 -29.35 9.09 25.60 0.23 -29.12 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.48 5.46 84.65 0.46 0.95 16 13 N -0.93 -54.33 13.29 21.44 0.28 -54.05 16 14 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 C 0.12 4.86 10.85 84.63 0.92 5.78 16 19 N -0.55 -20.90 9.22 -308.95 -2.85 -23.75 16 20 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 25 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 26 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 27 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.15 5.06 8.06 -2.91 -0.02 5.04 16 29 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.01 0.60 8.09 -2.38 -0.02 0.58 16 31 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 32 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -62.31 281.33 3.67 -58.64 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.08 Total: 7.25 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.03 Total: -22.88 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.56 Total: -77.80 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.91 Total: -10.75 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.31 3.67 -58.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058438.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.319 kcal (2) G-P(sol) polarization free energy of solvation -62.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds