Wall clock time and date at job start Sun Mar 29 2020 21:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.50700 * 120.35693 * 179.70865 * 6 5 4 8 8 C 1.53000 * 109.47145 * 265.02419 * 7 6 5 9 9 C 1.50700 * 109.47108 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99745 * 179.97438 * 9 8 7 12 12 N 1.31504 * 120.00246 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99732 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47338 * 90.00295 * 13 11 9 15 15 H 1.48504 * 109.47244 * 210.00452 * 13 11 9 16 16 H 1.48500 * 109.47402 * 330.00536 * 13 11 9 17 17 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 18 18 C 1.50704 * 119.58253 * 179.97438 * 17 6 5 19 19 N 1.31963 * 120.83448 * 0.02569 * 17 6 5 20 20 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 21 21 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 22 22 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 24 24 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 25 25 H 1.09003 * 109.47080 * 25.02202 * 7 6 5 26 26 H 1.08996 * 109.47061 * 145.01970 * 7 6 5 27 27 H 1.09003 * 109.46954 * 299.99860 * 8 7 6 28 28 H 1.09006 * 109.47062 * 59.99621 * 8 7 6 29 29 H 0.96999 * 120.00355 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47690 * 270.02847 * 18 17 6 31 31 H 1.09002 * 109.46833 * 30.02675 * 18 17 6 32 32 H 1.09001 * 109.46962 * 150.02267 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 3.8770 5.0197 0.0016 8 6 3.9743 5.5349 1.4390 9 6 4.6012 6.9053 1.4400 10 1 4.8999 7.3632 0.5086 11 6 4.7924 7.5749 2.6300 12 7 4.4282 7.0176 3.7641 13 14 5.5688 9.2739 2.6313 14 1 4.5061 10.3040 2.5092 15 1 6.3121 9.4776 3.9007 16 1 6.5055 9.3910 1.4850 17 6 1.8773 3.5096 0.0000 18 6 1.0048 4.7384 0.0007 19 7 1.3188 2.3140 0.0000 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.0230 0.3694 0.0098 24 1 5.1256 2.5944 0.0009 25 1 4.8753 4.9633 -0.4325 26 1 3.2626 5.7003 -0.5876 27 1 2.9760 5.5912 1.8730 28 1 4.5888 4.8541 2.0282 29 1 4.5630 7.4885 4.6013 30 1 0.7944 5.0342 1.0284 31 1 1.5201 5.5501 -0.5129 32 1 0.0687 4.5195 -0.5133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:45 Heat of formation + Delta-G solvation = -22.817095 kcal Electronic energy + Delta-G solvation = -14536.042356 eV Core-core repulsion = 12075.418162 eV Total energy + Delta-G solvation = -2460.624195 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39266 -37.97074 -34.24387 -32.67952 -32.28992 -29.36149 -28.07246 -26.55802 -24.71199 -22.31959 -21.90127 -20.27209 -17.95683 -16.57865 -16.40814 -15.81439 -14.64037 -14.47442 -14.34070 -13.77853 -13.70301 -12.82488 -12.68002 -12.32541 -12.19838 -11.93079 -11.71721 -11.56032 -11.15514 -10.93532 -10.66400 -10.56389 -9.92176 -9.70992 -9.30060 -9.26582 -9.05923 -8.36800 -7.80127 -6.01646 -4.05031 1.49931 1.68349 3.30221 3.30771 3.37448 3.40311 4.09920 4.44526 4.53090 5.19781 5.29760 5.32288 5.34179 5.37583 5.41314 5.59297 5.73964 5.84807 6.00632 6.02327 6.20550 6.38227 6.44538 6.63500 6.77119 6.83801 7.05043 7.50309 7.65724 7.77690 7.97774 8.21816 8.37993 9.02091 9.59377 11.09305 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054054 B = 0.005756 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.873276 B = 4863.018360 C = 4979.537011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.315 6.315 3 C 0.300 3.700 4 C -0.195 4.195 5 C -0.044 4.044 6 C -0.142 4.142 7 C -0.072 4.072 8 C 0.030 3.970 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.163 3.837 18 C -0.104 4.104 19 N -0.540 5.540 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.134 0.866 24 H 0.139 0.861 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.261 0.739 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 -9.778 -7.790 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.223 6.223 3 C 0.121 3.879 4 C -0.216 4.216 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.110 4.110 8 C -0.007 4.007 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.028 3.972 18 C -0.162 4.162 19 N -0.264 5.264 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.152 0.848 24 H 0.157 0.843 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.174 -10.095 -7.598 14.062 hybrid contribution 1.089 0.968 0.248 1.478 sum -5.085 -9.127 -7.350 12.774 Atomic orbital electron populations 1.22749 0.77950 1.02225 1.02313 1.86189 1.22374 1.25043 1.88658 1.19671 0.89321 0.84395 0.94536 1.20945 0.91833 0.99259 1.09558 1.21348 1.00537 0.90709 0.94292 1.21015 0.93823 0.98008 1.01608 1.20773 0.98862 0.89446 1.01889 1.19076 0.97431 0.95487 0.88741 1.21238 1.40352 1.01687 0.92779 0.92553 1.25014 0.95700 0.97964 0.95649 1.69964 1.47655 1.38002 0.97698 0.86606 0.79435 0.84599 0.77429 1.20643 1.21261 1.19850 1.20757 0.91776 0.91402 0.93298 1.20796 0.98269 0.93353 1.03740 1.67035 1.40984 0.98445 1.19970 0.92509 0.92653 0.89189 0.84776 0.84280 0.92186 0.91623 0.96282 0.96615 0.92967 0.89828 0.89645 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 101.05 1.05 1.56 16 2 O -0.31 -4.77 10.48 -18.73 -0.20 -4.97 16 3 C 0.30 5.08 7.49 -17.12 -0.13 4.95 16 4 C -0.20 -3.09 10.04 -39.28 -0.39 -3.48 16 5 C -0.04 -0.72 9.83 -39.31 -0.39 -1.11 16 6 C -0.14 -2.63 5.15 -104.47 -0.54 -3.17 16 7 C -0.07 -1.44 4.79 -27.88 -0.13 -1.57 16 8 C 0.03 0.75 4.95 -27.88 -0.14 0.61 16 9 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.63 13.28 55.43 0.74 -25.90 16 13 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.16 2.96 6.78 -82.60 -0.56 2.40 16 18 C -0.10 -1.67 9.54 36.01 0.34 -1.33 16 19 N -0.54 -9.62 9.13 -9.55 -0.09 -9.71 16 20 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 21 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 24 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 25 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 26 H 0.07 1.24 6.16 -51.93 -0.32 0.92 16 27 H 0.02 0.51 7.92 -51.93 -0.41 0.09 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.33 6.01 -51.93 -0.31 1.02 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -30.81 276.37 -6.08 -36.90 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.38 Total: -2.46 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.30 Total: -14.29 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.65 Total: -35.60 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.81 -6.08 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.078 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds