Wall clock time and date at job start Sun Mar 29 2020 21:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.50700 * 120.35693 * 179.70865 * 6 5 4 8 8 C 1.53000 * 109.47145 * 265.02419 * 7 6 5 9 9 C 1.50700 * 109.47108 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99823 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99745 * 179.97438 * 9 8 7 12 12 N 1.31504 * 120.00246 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99732 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47338 * 90.00295 * 13 11 9 15 15 H 1.48504 * 109.47244 * 210.00452 * 13 11 9 16 16 H 1.48500 * 109.47402 * 330.00536 * 13 11 9 17 17 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 18 18 C 1.50704 * 119.58253 * 179.97438 * 17 6 5 19 19 N 1.31963 * 120.83448 * 0.02569 * 17 6 5 20 20 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 21 21 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 22 22 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 24 24 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 25 25 H 1.09003 * 109.47080 * 25.02202 * 7 6 5 26 26 H 1.08996 * 109.47061 * 145.01970 * 7 6 5 27 27 H 1.09003 * 109.46954 * 299.99860 * 8 7 6 28 28 H 1.09006 * 109.47062 * 59.99621 * 8 7 6 29 29 H 0.96999 * 120.00355 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.47690 * 270.02847 * 18 17 6 31 31 H 1.09002 * 109.46833 * 30.02675 * 18 17 6 32 32 H 1.09001 * 109.46962 * 150.02267 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 3.8770 5.0197 0.0016 8 6 3.9743 5.5349 1.4390 9 6 4.6012 6.9053 1.4400 10 1 4.8999 7.3632 0.5086 11 6 4.7924 7.5749 2.6300 12 7 4.4282 7.0176 3.7641 13 14 5.5688 9.2739 2.6313 14 1 4.5061 10.3040 2.5092 15 1 6.3121 9.4776 3.9007 16 1 6.5055 9.3910 1.4850 17 6 1.8773 3.5096 0.0000 18 6 1.0048 4.7384 0.0007 19 7 1.3188 2.3140 0.0000 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 4.0230 0.3694 0.0098 24 1 5.1256 2.5944 0.0009 25 1 4.8753 4.9633 -0.4325 26 1 3.2626 5.7003 -0.5876 27 1 2.9760 5.5912 1.8730 28 1 4.5888 4.8541 2.0282 29 1 4.5630 7.4885 4.6013 30 1 0.7944 5.0342 1.0284 31 1 1.5201 5.5501 -0.5129 32 1 0.0687 4.5195 -0.5133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:44 Heat of formation + Delta-G solvation = -42.588638 kcal Electronic energy + Delta-G solvation = -14536.899715 eV Core-core repulsion = 12075.418162 eV Total energy + Delta-G solvation = -2461.481553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.68300 -39.19803 -36.02020 -34.15559 -33.95625 -31.05193 -29.24406 -27.97161 -26.36427 -23.89513 -23.28953 -21.89506 -19.16331 -18.51532 -17.85548 -16.99381 -16.50531 -16.01958 -15.53670 -15.07296 -15.02224 -14.45395 -14.33838 -13.92028 -13.50352 -13.42760 -13.07996 -12.92000 -12.78462 -12.64069 -12.31357 -11.99682 -11.70659 -11.48984 -11.17652 -10.66224 -10.58134 -10.49482 -9.17369 -8.16214 -6.27633 0.18374 0.34203 1.43745 1.44354 1.55440 2.16324 2.43897 2.76582 3.17440 3.27265 3.90560 4.04042 4.06411 4.31866 4.43450 4.48335 4.58958 4.65288 4.71998 4.77646 4.79017 4.94914 5.00771 5.15056 5.23393 5.36487 5.52316 5.60523 5.79477 5.88879 6.25273 6.28297 6.88577 6.90261 7.42015 8.95209 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054054 B = 0.005756 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.873276 B = 4863.018360 C = 4979.537011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.318 6.318 3 C 0.291 3.709 4 C -0.194 4.194 5 C -0.044 4.044 6 C -0.166 4.166 7 C -0.056 4.056 8 C 0.037 3.963 9 C -0.538 4.538 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.963 3.037 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.261 1.261 17 C 0.150 3.850 18 C -0.101 4.101 19 N -0.551 5.551 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.126 0.874 23 H 0.163 0.837 24 H 0.159 0.841 25 H 0.068 0.932 26 H 0.075 0.925 27 H -0.006 1.006 28 H -0.015 1.015 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -10.041 -8.888 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.226 6.226 3 C 0.112 3.888 4 C -0.214 4.214 5 C -0.069 4.069 6 C -0.168 4.168 7 C -0.094 4.094 8 C 0.000 4.000 9 C -0.576 4.576 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.788 3.212 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.185 1.185 17 C 0.015 3.985 18 C -0.158 4.158 19 N -0.276 5.276 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.144 0.856 23 H 0.181 0.819 24 H 0.176 0.824 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.012 0.988 28 H 0.003 0.997 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.900 -10.367 -8.717 14.774 hybrid contribution 0.939 0.925 0.593 1.445 sum -4.961 -9.442 -8.124 13.407 Atomic orbital electron populations 1.23014 0.76192 1.04536 1.01931 1.86195 1.24127 1.24009 1.88280 1.20045 0.90098 0.84761 0.93883 1.21260 0.91771 1.00007 1.08363 1.21625 1.01504 0.90504 0.93272 1.20953 0.94343 0.97721 1.03831 1.20488 0.99827 0.90647 0.98392 1.18908 0.95042 0.94417 0.91609 1.21704 1.40032 1.02679 0.93208 0.91622 1.25950 0.96234 1.02265 0.95245 1.70108 1.49120 1.39922 0.98422 0.85478 0.78693 0.79392 0.77671 1.19822 1.21193 1.18504 1.21003 0.92038 0.92100 0.93355 1.20776 0.99029 0.92858 1.03109 1.67063 1.41323 0.98588 1.20593 0.93273 0.92629 0.85584 0.81936 0.82390 0.91300 0.90702 0.98782 0.99651 0.92928 0.91209 0.89412 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 2.00 16 2 O -0.32 -9.05 10.48 -89.92 -0.94 -10.00 16 3 C 0.29 9.48 7.49 84.79 0.63 10.12 16 4 C -0.19 -5.78 10.04 22.47 0.23 -5.55 16 5 C -0.04 -1.40 9.83 22.45 0.22 -1.18 16 6 C -0.17 -6.08 5.15 -19.77 -0.10 -6.18 16 7 C -0.06 -2.22 4.79 29.85 0.14 -2.08 16 8 C 0.04 1.92 4.95 29.85 0.15 2.07 16 9 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 10 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 11 C 0.00 0.03 5.46 84.66 0.46 0.50 16 12 N -0.94 -56.72 13.28 21.45 0.28 -56.43 16 13 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 C 0.15 5.41 6.78 42.49 0.29 5.70 16 18 C -0.10 -3.23 9.54 71.24 0.68 -2.55 16 19 N -0.55 -19.24 9.13 -297.00 -2.71 -21.95 16 20 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 21 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 22 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 24 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 25 H 0.07 2.58 8.06 -2.39 -0.02 2.56 16 26 H 0.07 2.80 6.16 -2.39 -0.01 2.78 16 27 H -0.01 -0.35 7.92 -2.39 -0.02 -0.37 16 28 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.09 2.71 6.01 -2.39 -0.01 2.70 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -65.79 276.37 3.87 -61.92 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.10 Total: 7.57 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.11 Total: -26.62 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.43 Total: -78.38 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.94 Total: -10.00 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.79 3.87 -61.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.334 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds