Wall clock time and date at job start Sun Mar 29 2020 22:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 114.00025 * 2 1 4 4 C 1.50699 * 109.46842 * 179.97438 * 3 2 1 5 5 C 1.38221 * 120.42213 * 270.02014 * 4 3 2 6 6 N 1.31861 * 120.76536 * 179.97438 * 5 4 3 7 7 C 1.31888 * 121.72133 * 0.02562 * 6 5 4 8 8 C 1.38176 * 120.76750 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.41663 * 180.27133 * 8 7 6 10 10 C 1.53005 * 109.47006 * 269.72089 * 9 8 7 11 11 C 1.50703 * 109.47006 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99934 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00096 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99840 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47215 * 60.00279 * 15 13 11 17 17 H 1.48507 * 109.46713 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47365 * 299.99847 * 15 13 11 19 19 C 1.38629 * 120.41551 * 90.00619 * 4 3 2 20 20 H 1.09007 * 109.47040 * 59.99366 * 1 2 3 21 21 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46972 * 300.00037 * 1 2 3 23 23 H 1.08996 * 109.46547 * 60.00305 * 3 2 1 24 24 H 1.08991 * 109.47187 * 300.00547 * 3 2 1 25 25 H 1.07993 * 119.62123 * 0.02562 * 5 4 3 26 26 H 1.08003 * 119.61498 * 180.02562 * 7 6 5 27 27 H 1.08999 * 109.47292 * 29.72288 * 9 8 7 28 28 H 1.09002 * 109.46937 * 149.72774 * 9 8 7 29 29 H 1.08999 * 109.47257 * 300.00220 * 10 9 8 30 30 H 1.09002 * 109.46713 * 60.00548 * 10 9 8 31 31 H 0.97003 * 120.00424 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.79273 * 0.03913 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2097 1.1310 1.1928 6 7 5.5242 1.0263 1.2013 7 6 6.2226 0.9711 0.0839 8 6 5.5943 1.0222 -1.1457 9 6 6.3997 0.9524 -2.4176 10 6 6.7874 2.3667 -2.8539 11 6 7.5923 2.2970 -4.1261 12 1 7.8055 1.3397 -4.5784 13 6 8.0564 3.4552 -4.7126 14 7 7.7972 4.6209 -4.1615 15 14 9.0534 3.3688 -6.2899 16 1 8.2405 2.7283 -7.3549 17 1 9.4309 4.7414 -6.7127 18 1 10.2819 2.5680 -6.0558 19 6 4.2127 1.1309 -1.1946 20 1 -0.3633 0.5140 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 3.6717 1.1730 2.1283 26 1 7.2982 0.8850 0.1305 27 1 7.3017 0.3654 -2.2447 28 1 5.8039 0.4815 -3.1995 29 1 5.8855 2.9538 -3.0267 30 1 7.3833 2.8376 -2.0720 31 1 8.1234 5.4358 -4.5743 32 1 3.6946 1.1726 -2.1413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:02 Heat of formation + Delta-G solvation = -50.421658 kcal Electronic energy + Delta-G solvation = -14156.895085 eV Core-core repulsion = 11695.073867 eV Total energy + Delta-G solvation = -2461.821218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29111 -38.70942 -36.26592 -34.33742 -33.81545 -31.01795 -28.35832 -27.16076 -26.39375 -24.36910 -23.39839 -21.53958 -18.54958 -17.91805 -17.77644 -17.33531 -16.55656 -16.48660 -16.21404 -14.99586 -14.76610 -14.64690 -14.17720 -14.00763 -13.83434 -13.36717 -13.17179 -12.83427 -12.70108 -12.41683 -12.25853 -11.84838 -11.70218 -11.27963 -10.68704 -10.62870 -10.54147 -10.35758 -9.76794 -8.19810 -6.31901 0.07761 0.32505 1.41721 1.44560 1.52467 2.41511 2.64431 3.13564 3.14045 3.54287 3.82976 3.84232 4.03801 4.07677 4.24773 4.39154 4.49049 4.58878 4.60206 4.78527 4.83429 4.84389 4.89299 5.12853 5.22085 5.30894 5.48691 5.71090 5.76267 5.82540 6.19821 6.21444 6.84544 6.97930 7.37872 8.91626 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039749 B = 0.005349 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.257570 B = 5233.170822 C = 5597.596369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.112 3.888 4 C -0.144 4.144 5 C 0.097 3.903 6 N -0.503 5.503 7 C 0.089 3.911 8 C -0.128 4.128 9 C -0.060 4.060 10 C 0.037 3.963 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.266 1.266 19 C -0.067 4.067 20 H 0.049 0.951 21 H 0.095 0.905 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.181 0.819 26 H 0.160 0.840 27 H 0.072 0.928 28 H 0.068 0.932 29 H -0.010 1.010 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -7.356 7.832 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.035 3.965 4 C -0.146 4.146 5 C -0.060 4.060 6 N -0.211 5.211 7 C -0.067 4.067 8 C -0.130 4.130 9 C -0.098 4.098 10 C 0.000 4.000 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.093 4.093 20 H 0.068 0.932 21 H 0.114 0.886 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.198 0.802 26 H 0.178 0.822 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.274 -7.379 8.623 16.717 hybrid contribution 0.057 0.647 -1.636 1.761 sum -12.217 -6.732 6.987 15.601 Atomic orbital electron populations 1.22965 0.79062 1.03902 1.01223 1.87933 1.21751 1.27865 1.95676 1.21272 0.87266 0.85182 1.02760 1.20822 0.96913 1.02966 0.93904 1.23058 0.89662 0.94877 0.98429 1.67716 1.09200 1.12985 1.31199 1.22843 1.00813 0.95753 0.87284 1.21220 0.95138 0.99323 0.97312 1.20515 0.98331 0.98621 0.92369 1.18921 0.94662 0.91607 0.94845 1.21671 1.33822 0.93239 1.09507 0.91685 1.25979 0.97430 0.94999 1.01281 1.70101 1.47288 0.98340 1.41689 0.85491 0.79151 0.77224 0.79128 1.19053 1.21012 1.19095 1.21632 0.93447 0.95109 0.99120 0.93193 0.88620 0.92381 0.89652 0.91410 0.80198 0.82240 0.90978 0.91288 0.99146 0.99122 0.92781 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -9.57 10.69 -148.98 -1.59 -11.16 16 3 C 0.11 2.42 6.09 71.24 0.43 2.85 16 4 C -0.14 -4.13 5.53 -19.78 -0.11 -4.24 16 5 C 0.10 2.81 10.86 84.68 0.92 3.73 16 6 N -0.50 -17.16 10.36 -195.85 -2.03 -19.19 16 7 C 0.09 3.18 10.86 84.67 0.92 4.10 16 8 C -0.13 -4.75 5.15 -19.77 -0.10 -4.86 16 9 C -0.06 -2.48 5.31 29.85 0.16 -2.32 16 10 C 0.04 1.93 4.96 29.85 0.15 2.08 16 11 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 0.05 5.46 84.65 0.46 0.52 16 14 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 15 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C -0.07 -2.24 9.55 22.47 0.21 -2.02 16 20 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 21 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 24 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 25 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 26 H 0.16 5.32 8.06 -2.91 -0.02 5.30 16 27 H 0.07 2.81 8.09 -2.39 -0.02 2.79 16 28 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -67.42 282.38 4.30 -63.12 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.08 Total: 6.97 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.53 Total: -28.98 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.74 Total: -75.86 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.59 Total: -11.16 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.42 4.30 -63.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.703 kcal (2) G-P(sol) polarization free energy of solvation -67.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds