Wall clock time and date at job start Sun Mar 29 2020 21:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35675 * 116.99964 * 2 1 4 4 N 1.32273 * 119.68588 * 0.02562 * 3 2 1 5 5 C 1.31932 * 121.64977 * 180.02562 * 4 3 2 6 6 C 1.38093 * 120.83134 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35527 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46925 * 90.00506 * 7 6 5 9 9 C 1.50696 * 109.47300 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00339 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46692 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47025 * 120.00050 * 13 11 9 16 16 H 1.48500 * 109.46740 * 240.00408 * 13 11 9 17 17 C 1.38783 * 119.28967 * 0.25546 * 6 5 4 18 18 C 1.38423 * 118.48281 * 359.46132 * 17 6 5 19 19 C 1.50697 * 120.44710 * 180.28406 * 18 17 6 20 20 H 1.09000 * 109.47305 * 59.99755 * 1 2 3 21 21 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.46741 * 299.99899 * 1 2 3 23 23 H 1.07995 * 119.58587 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.47318 * 209.99740 * 7 6 5 25 25 H 1.09000 * 109.47161 * 330.00370 * 7 6 5 26 26 H 1.09004 * 109.46930 * 299.99901 * 8 7 6 27 27 H 1.09004 * 109.47059 * 59.99503 * 8 7 6 28 28 H 0.97000 * 120.00540 * 179.97438 * 12 11 9 29 29 H 1.07997 * 120.75747 * 179.72237 * 17 6 5 30 30 H 1.08992 * 109.47402 * 270.27758 * 19 18 17 31 31 H 1.09003 * 109.46938 * 30.27538 * 19 18 17 32 32 H 1.08995 * 109.47303 * 150.27381 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 0.0005 5 6 1.8768 3.5096 0.0000 6 6 3.2507 3.6491 -0.0016 7 6 3.8771 5.0198 -0.0027 8 6 4.0908 5.4840 1.4395 9 6 4.7165 6.8549 1.4385 10 1 4.9392 7.3461 0.5028 11 6 5.0039 7.4824 2.6320 12 7 4.7324 6.8844 3.7714 13 14 5.7790 9.1821 2.6307 14 1 5.9822 9.6323 1.2303 15 1 4.8819 10.1356 3.3315 16 1 7.0884 9.1294 3.3292 17 6 4.0484 2.5134 -0.0081 18 6 3.4323 1.2739 -0.0013 19 6 4.2557 0.0118 -0.0015 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2515 4.3901 0.0009 24 1 4.8370 4.9802 -0.5175 25 1 3.2180 5.7200 -0.5159 26 1 3.1309 5.5235 1.9544 27 1 4.7498 4.7836 1.9527 28 1 4.9349 7.3257 4.6111 29 1 5.1253 2.5949 -0.0139 30 1 4.4534 -0.2929 -1.0291 31 1 5.2001 0.1940 0.5115 32 1 3.7094 -0.7786 0.5131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:16 Heat of formation + Delta-G solvation = -46.031341 kcal Electronic energy + Delta-G solvation = -14381.834083 eV Core-core repulsion = 11920.203243 eV Total energy + Delta-G solvation = -2461.630840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.68489 -39.02100 -36.01289 -34.63475 -34.06984 -30.81296 -28.53510 -27.99642 -26.72673 -23.96015 -23.51137 -21.50596 -19.29959 -18.51529 -18.19486 -17.01396 -16.50643 -15.66895 -15.35156 -15.22697 -14.76691 -14.52999 -14.33736 -13.96879 -13.66824 -13.49858 -13.12935 -12.92917 -12.82873 -12.61484 -12.26375 -12.10770 -11.79215 -11.56647 -11.21366 -10.60268 -10.51741 -10.46427 -9.15920 -8.18367 -6.30183 0.17212 0.32940 1.42252 1.42757 1.56007 2.17225 2.42546 2.76796 3.15210 3.39090 3.87116 3.96300 4.10930 4.28135 4.41100 4.43899 4.51089 4.65062 4.74790 4.82700 4.85848 4.88630 5.09045 5.21410 5.26117 5.34910 5.51564 5.57918 5.76361 5.85693 6.23116 6.27056 6.85057 6.87957 7.39737 8.93404 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.051341 B = 0.005439 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.244827 B = 5146.993249 C = 5316.648178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.314 6.314 3 C 0.285 3.715 4 N -0.547 5.547 5 C 0.117 3.883 6 C -0.155 4.155 7 C -0.054 4.054 8 C 0.035 3.965 9 C -0.540 4.540 10 H 0.066 0.934 11 C -0.001 4.001 12 N -0.936 5.936 13 Si 0.965 3.035 14 H -0.259 1.259 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.053 4.053 18 C -0.156 4.156 19 C -0.094 4.094 20 H 0.054 0.946 21 H 0.127 0.873 22 H 0.048 0.952 23 H 0.165 0.835 24 H 0.071 0.929 25 H 0.070 0.930 26 H -0.012 1.012 27 H -0.010 1.010 28 H 0.263 0.737 29 H 0.154 0.846 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 -12.287 -8.872 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.221 6.221 3 C 0.106 3.894 4 N -0.270 5.270 5 C -0.038 4.038 6 C -0.157 4.157 7 C -0.092 4.092 8 C -0.003 4.003 9 C -0.578 4.578 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.790 3.210 14 H -0.182 1.182 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.078 4.078 18 C -0.159 4.159 19 C -0.151 4.151 20 H 0.073 0.927 21 H 0.145 0.855 22 H 0.067 0.933 23 H 0.182 0.818 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.171 0.829 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.837 -12.623 -8.703 16.077 hybrid contribution 0.779 1.211 0.559 1.545 sum -4.057 -11.412 -8.144 14.596 Atomic orbital electron populations 1.23020 0.76308 1.04547 1.01866 1.86177 1.23898 1.23811 1.88253 1.19879 0.89574 0.84999 0.94995 1.67254 1.41217 0.99025 1.19480 1.22434 0.92777 0.93684 0.94886 1.21080 0.94968 0.97354 1.02283 1.20426 0.99965 0.90676 0.98138 1.18952 0.94751 0.94785 0.91763 1.21746 1.40365 1.02828 0.92856 0.91580 1.25987 0.96334 1.02304 0.95217 1.70120 1.49407 1.40051 0.98049 0.85391 0.77914 0.78971 0.78726 1.18241 1.20632 1.20524 1.21521 1.01304 0.90222 0.94750 1.20233 0.91310 0.97910 1.06413 1.20598 0.98695 0.92419 1.03400 0.92718 0.85534 0.93324 0.81771 0.91056 0.91121 0.99344 0.99173 0.92861 0.82875 0.89778 0.90304 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.97 16 2 O -0.31 -8.76 9.54 -89.93 -0.86 -9.62 16 3 C 0.28 9.23 7.47 84.78 0.63 9.86 16 4 N -0.55 -18.95 9.22 -308.94 -2.85 -21.80 16 5 C 0.12 4.13 10.85 84.64 0.92 5.05 16 6 C -0.15 -5.61 5.15 -19.77 -0.10 -5.71 16 7 C -0.05 -2.16 5.31 29.85 0.16 -2.00 16 8 C 0.03 1.81 4.95 29.85 0.15 1.95 16 9 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 10 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 11 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 12 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 13 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 C -0.05 -1.71 9.53 22.44 0.21 -1.50 16 18 C -0.16 -4.71 5.91 -19.67 -0.12 -4.83 16 19 C -0.09 -2.10 9.81 71.23 0.70 -1.40 16 20 H 0.05 1.17 8.10 -2.39 -0.02 1.16 16 21 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 23 H 0.17 5.32 8.06 -2.91 -0.02 5.30 16 24 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 25 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 26 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.07 1.58 7.55 -2.39 -0.02 1.57 16 Total: -1.00 -66.44 279.61 4.12 -62.32 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.09 Total: 6.27 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.42 Total: -26.13 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.56 Total: -78.68 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.86 Total: -9.62 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -66.44 4.12 -62.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.288 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds