Wall clock time and date at job start Sun Mar 29 2020 21:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99958 * 2 1 4 4 C 1.38923 * 119.68121 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11041 * 179.74645 * 4 3 2 6 6 C 1.50701 * 120.75872 * 180.27911 * 5 4 3 7 7 C 1.53002 * 109.47308 * 90.00477 * 6 5 4 8 8 C 1.50693 * 109.46932 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00498 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99774 * 179.97438 * 8 7 6 11 11 N 1.31506 * 119.99791 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99991 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47107 * 59.99967 * 12 10 8 14 14 H 1.48500 * 109.46995 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47243 * 300.00052 * 12 10 8 16 16 C 1.38830 * 118.48762 * 0.25931 * 5 4 3 17 17 C 1.38049 * 119.28862 * 359.97438 * 16 5 4 18 18 C 1.50693 * 119.58341 * 180.02562 * 17 16 5 19 19 N 1.31971 * 120.83248 * 359.97438 * 17 16 5 20 20 H 1.09001 * 109.47025 * 300.00278 * 1 2 3 21 21 H 1.09004 * 109.47033 * 59.99481 * 1 2 3 22 22 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 23 23 H 1.08002 * 120.44820 * 0.03209 * 4 3 2 24 24 H 1.09005 * 109.46781 * 210.00377 * 6 5 4 25 25 H 1.09000 * 109.47379 * 330.00181 * 6 5 4 26 26 H 1.09007 * 109.46391 * 299.99811 * 7 6 5 27 27 H 1.09000 * 109.47142 * 59.99559 * 7 6 5 28 28 H 0.96999 * 120.00003 * 179.97438 * 11 10 8 29 29 H 1.08002 * 120.35837 * 179.97438 * 16 5 4 30 30 H 1.09000 * 109.47224 * 90.00202 * 18 17 16 31 31 H 1.09003 * 109.47156 * 210.00291 * 18 17 16 32 32 H 1.09003 * 109.47108 * 329.99839 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5130 -0.0048 6 6 5.5513 2.6268 -0.0107 7 6 6.0544 2.6618 -1.4552 8 6 7.5571 2.7750 -1.4611 9 1 8.0991 2.8180 -0.5279 10 6 8.2401 2.8235 -2.6579 11 7 7.5802 2.7716 -3.7942 12 14 10.1028 2.9645 -2.6652 13 1 10.6904 1.7948 -1.9639 14 1 10.5911 2.9984 -4.0672 15 1 10.5075 4.2129 -1.9702 16 6 3.2506 3.6491 -0.0050 17 6 1.8772 3.5097 -0.0005 18 6 1.0047 4.7384 -0.0013 19 7 1.3187 2.3140 0.0036 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 4.0229 0.3694 0.0004 24 1 5.8482 3.5429 0.4998 25 1 5.9827 1.7680 0.5035 26 1 5.7573 1.7456 -1.9657 27 1 5.6230 3.5206 -1.9695 28 1 8.0606 2.8062 -4.6361 29 1 3.6995 4.6314 -0.0087 30 1 0.7912 5.0318 -1.0291 31 1 0.0703 4.5208 0.5161 32 1 1.5216 5.5513 0.5088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:49 Heat of formation + Delta-G solvation = -26.235257 kcal Electronic energy + Delta-G solvation = -14359.156496 eV Core-core repulsion = 11898.384079 eV Total energy + Delta-G solvation = -2460.772417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36323 -37.86946 -34.71878 -32.69352 -31.69983 -29.65257 -28.07847 -26.41205 -25.28800 -22.52074 -21.87677 -19.94253 -17.54708 -16.59212 -16.25819 -15.81250 -15.50089 -14.50724 -14.23677 -13.90244 -13.58656 -12.76831 -12.71652 -12.38461 -12.24541 -12.13387 -11.80748 -11.43181 -11.28276 -10.91348 -10.81776 -10.65007 -9.91351 -9.91002 -9.36498 -9.15239 -8.77393 -8.38294 -8.09025 -6.02583 -4.06304 1.49590 1.70114 3.30659 3.32268 3.36875 3.39082 4.08175 4.42875 4.44337 5.04652 5.29275 5.33097 5.36730 5.43897 5.48600 5.60288 5.67179 5.71483 5.72653 5.79840 6.12540 6.29276 6.32195 6.53547 6.74334 6.89199 6.99159 7.51287 7.62355 7.74178 7.95763 8.17410 8.35250 9.00023 9.57961 11.08506 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039334 B = 0.005821 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.687950 B = 4808.784737 C = 5172.309161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.318 3.682 4 C -0.196 4.196 5 C 0.020 3.980 6 C -0.081 4.081 7 C 0.031 3.969 8 C -0.524 4.524 9 H 0.057 0.943 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.894 3.106 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.206 4.206 17 C 0.157 3.843 18 C -0.100 4.100 19 N -0.555 5.555 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.262 0.738 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 -0.105 7.769 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.219 6.219 3 C 0.139 3.861 4 C -0.217 4.217 5 C 0.013 3.987 6 C -0.119 4.119 7 C -0.006 4.006 8 C -0.563 4.563 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.227 4.227 17 C 0.021 3.979 18 C -0.157 4.157 19 N -0.280 5.280 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.109 0.891 23 H 0.156 0.844 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.258 -0.447 7.577 15.277 hybrid contribution 1.646 0.161 -0.224 1.669 sum -11.613 -0.287 7.353 13.748 Atomic orbital electron populations 1.22755 0.78005 1.02334 1.02137 1.86234 1.22317 1.24988 1.88312 1.19717 0.89276 0.84250 0.92809 1.20957 0.91464 0.99527 1.09716 1.20607 0.98183 0.91313 0.88584 1.20922 0.86617 1.01944 1.02375 1.19071 0.95682 0.97740 0.88140 1.21176 0.91764 1.50915 0.92411 0.92508 1.25023 0.98505 0.95193 0.95615 1.69957 1.35695 1.50280 0.97336 0.86628 0.85529 0.78693 0.76977 1.20178 1.21269 1.20191 1.21725 0.93502 0.99875 1.07572 1.20779 0.91948 0.91621 0.93523 1.20677 0.98913 0.93129 1.02976 1.66996 1.40929 0.98377 1.21720 0.92694 0.92579 0.89106 0.84377 0.91430 0.91503 0.96259 0.96279 0.92848 0.84751 0.90477 0.90985 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 101.05 1.05 1.56 16 2 O -0.31 -5.00 10.48 -18.73 -0.20 -5.19 16 3 C 0.32 5.63 7.49 -17.12 -0.13 5.50 16 4 C -0.20 -3.61 9.75 -39.28 -0.38 -3.99 16 5 C 0.02 0.38 5.17 -104.35 -0.54 -0.16 16 6 C -0.08 -1.66 5.33 -27.88 -0.15 -1.81 16 7 C 0.03 0.79 4.95 -27.89 -0.14 0.66 16 8 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 9 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 12 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.21 -3.51 9.44 -39.43 -0.37 -3.88 16 17 C 0.16 2.48 6.78 -82.61 -0.56 1.92 16 18 C -0.10 -1.15 10.17 36.00 0.37 -0.78 16 19 N -0.55 -9.43 9.13 -9.55 -0.09 -9.51 16 20 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 21 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 24 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 25 H 0.07 1.32 8.10 -51.93 -0.42 0.89 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 281.13 15.07 4.24 4.24 Total: -1.00 -31.23 281.13 -6.20 -37.43 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.60 Total: -2.89 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.26 Total: -14.38 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.65 Total: -35.65 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.20 Total: -5.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.23 -6.20 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.199 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds