Wall clock time and date at job start Sun Mar 29 2020 21:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99958 * 2 1 4 4 C 1.38923 * 119.68121 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11041 * 179.74645 * 4 3 2 6 6 C 1.50701 * 120.75872 * 180.27911 * 5 4 3 7 7 C 1.53002 * 109.47308 * 90.00477 * 6 5 4 8 8 C 1.50693 * 109.46932 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00498 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99774 * 179.97438 * 8 7 6 11 11 N 1.31506 * 119.99791 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99991 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47107 * 59.99967 * 12 10 8 14 14 H 1.48500 * 109.46995 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47243 * 300.00052 * 12 10 8 16 16 C 1.38830 * 118.48762 * 0.25931 * 5 4 3 17 17 C 1.38049 * 119.28862 * 359.97438 * 16 5 4 18 18 C 1.50693 * 119.58341 * 180.02562 * 17 16 5 19 19 N 1.31971 * 120.83248 * 359.97438 * 17 16 5 20 20 H 1.09001 * 109.47025 * 300.00278 * 1 2 3 21 21 H 1.09004 * 109.47033 * 59.99481 * 1 2 3 22 22 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 23 23 H 1.08002 * 120.44820 * 0.03209 * 4 3 2 24 24 H 1.09005 * 109.46781 * 210.00377 * 6 5 4 25 25 H 1.09000 * 109.47379 * 330.00181 * 6 5 4 26 26 H 1.09007 * 109.46391 * 299.99811 * 7 6 5 27 27 H 1.09000 * 109.47142 * 59.99559 * 7 6 5 28 28 H 0.96999 * 120.00003 * 179.97438 * 11 10 8 29 29 H 1.08002 * 120.35837 * 179.97438 * 16 5 4 30 30 H 1.09000 * 109.47224 * 90.00202 * 18 17 16 31 31 H 1.09003 * 109.47156 * 210.00291 * 18 17 16 32 32 H 1.09003 * 109.47108 * 329.99839 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5130 -0.0048 6 6 5.5513 2.6268 -0.0107 7 6 6.0544 2.6618 -1.4552 8 6 7.5571 2.7750 -1.4611 9 1 8.0991 2.8180 -0.5279 10 6 8.2401 2.8235 -2.6579 11 7 7.5802 2.7716 -3.7942 12 14 10.1028 2.9645 -2.6652 13 1 10.6904 1.7948 -1.9639 14 1 10.5911 2.9984 -4.0672 15 1 10.5075 4.2129 -1.9702 16 6 3.2506 3.6491 -0.0050 17 6 1.8772 3.5097 -0.0005 18 6 1.0047 4.7384 -0.0013 19 7 1.3187 2.3140 0.0036 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 4.0229 0.3694 0.0004 24 1 5.8482 3.5429 0.4998 25 1 5.9827 1.7680 0.5035 26 1 5.7573 1.7456 -1.9657 27 1 5.6230 3.5206 -1.9695 28 1 8.0606 2.8062 -4.6361 29 1 3.6995 4.6314 -0.0087 30 1 0.7912 5.0318 -1.0291 31 1 0.0703 4.5208 0.5161 32 1 1.5216 5.5513 0.5088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:49 Heat of formation + Delta-G solvation = -46.422148 kcal Electronic energy + Delta-G solvation = -14360.031866 eV Core-core repulsion = 11898.384079 eV Total energy + Delta-G solvation = -2461.647787 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66398 -39.11491 -36.41330 -34.58357 -32.97117 -31.41433 -29.19409 -27.55035 -27.14382 -23.96960 -23.54401 -21.45162 -18.90888 -18.40237 -17.83298 -17.01278 -16.85408 -16.51500 -15.44491 -15.07062 -14.91407 -14.51617 -14.36890 -13.93922 -13.43905 -13.23208 -13.12446 -12.94326 -12.77214 -12.60768 -12.51229 -12.02204 -11.77498 -11.69329 -11.31973 -10.63798 -10.55846 -10.34374 -9.38165 -8.20047 -6.32319 0.17209 0.30408 1.42148 1.45222 1.53145 2.12319 2.41796 2.74951 3.13543 3.25835 3.76876 4.08031 4.17536 4.28226 4.43129 4.45996 4.50326 4.65339 4.72659 4.77613 4.80281 4.83203 5.01534 5.04224 5.20884 5.36933 5.47535 5.55952 5.73073 5.81372 6.19968 6.26627 6.84009 6.86300 7.37452 8.91707 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039334 B = 0.005821 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.687950 B = 4808.784737 C = 5172.309161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.311 3.689 4 C -0.215 4.215 5 C 0.003 3.997 6 C -0.066 4.066 7 C 0.038 3.962 8 C -0.544 4.544 9 H 0.067 0.933 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.267 1.267 14 H -0.285 1.285 15 H -0.264 1.264 16 C -0.215 4.215 17 C 0.157 3.843 18 C -0.096 4.096 19 N -0.556 5.556 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.123 0.877 23 H 0.136 0.864 24 H 0.080 0.920 25 H 0.071 0.929 26 H -0.013 1.013 27 H -0.006 1.006 28 H 0.264 0.736 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 0.566 8.732 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.133 3.867 4 C -0.236 4.236 5 C -0.004 4.004 6 C -0.104 4.104 7 C 0.000 4.000 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.792 3.208 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.189 1.189 16 C -0.235 4.235 17 C 0.021 3.979 18 C -0.153 4.153 19 N -0.282 5.282 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.141 0.859 23 H 0.154 0.846 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.006 0.994 27 H 0.012 0.988 28 H 0.072 0.928 29 H 0.168 0.832 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.531 0.216 8.561 16.013 hybrid contribution 1.603 -0.070 -0.528 1.689 sum -11.928 0.146 8.033 14.381 Atomic orbital electron populations 1.23055 0.75773 1.04604 1.02245 1.86219 1.24560 1.24292 1.87999 1.19832 0.89248 0.85089 0.92542 1.21030 0.92286 0.99473 1.10814 1.20508 0.97303 0.92376 0.90215 1.20645 0.88086 1.02793 0.98846 1.18893 0.95081 0.94918 0.91075 1.21648 0.93008 1.50534 0.92981 0.91490 1.26006 1.04005 0.94634 0.95143 1.70105 1.37906 1.51399 0.98073 0.85463 0.78898 0.79323 0.77143 1.19139 1.21053 1.18857 1.21967 0.94142 0.99932 1.07476 1.21490 0.92222 0.92659 0.91509 1.20805 0.98831 0.91600 1.04110 1.67143 1.40784 0.98580 1.21732 0.92179 0.92785 0.85852 0.84598 0.90146 0.91060 0.99450 0.98774 0.92757 0.83215 0.89424 0.89780 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.38 113.37 1.18 2.02 16 2 O -0.32 -10.20 10.48 -89.94 -0.94 -11.14 16 3 C 0.31 10.96 7.49 84.80 0.63 11.59 16 4 C -0.22 -8.07 9.75 22.47 0.22 -7.85 16 5 C 0.00 0.12 5.17 -19.69 -0.10 0.02 16 6 C -0.07 -2.74 5.33 29.85 0.16 -2.58 16 7 C 0.04 2.00 4.95 29.85 0.15 2.14 16 8 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 9 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 10 C 0.00 0.00 5.46 84.66 0.46 0.46 16 11 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 12 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 14 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 16 C -0.22 -7.13 9.44 22.37 0.21 -6.92 16 17 C 0.16 4.73 6.78 42.49 0.29 5.02 16 18 C -0.10 -1.95 10.17 71.23 0.72 -1.23 16 19 N -0.56 -18.29 9.13 -296.99 -2.71 -21.00 16 20 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 21 H 0.05 1.22 8.11 -2.38 -0.02 1.20 16 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 24 H 0.08 3.07 8.10 -2.38 -0.02 3.05 16 25 H 0.07 2.83 8.10 -2.39 -0.02 2.81 16 26 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 Total: -1.00 -67.47 281.13 3.90 -63.58 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.09 Total: 7.41 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 4.15 Total: -27.74 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -2.43 Total: -78.00 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.94 Total: -11.14 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.47 3.90 -63.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.153 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds