Wall clock time and date at job start Sun Mar 29 2020 21:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35909 * 117.00049 * 2 1 4 4 C 1.38754 * 120.47605 * 359.97438 * 3 2 1 5 5 N 1.31806 * 120.68327 * 180.28054 * 4 3 2 6 6 C 1.31885 * 121.78203 * 359.47092 * 5 4 3 7 7 C 1.38206 * 120.88485 * 0.52893 * 6 5 4 8 8 C 1.50697 * 120.38868 * 179.77066 * 7 6 5 9 9 C 1.53008 * 109.46753 * 264.97409 * 8 7 6 10 10 C 1.50698 * 109.47102 * 179.97438 * 9 8 7 11 11 H 1.08008 * 119.99771 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00434 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99597 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00561 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47000 * 59.99820 * 14 12 10 16 16 H 1.48496 * 109.47088 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46696 * 299.99860 * 14 12 10 18 18 C 1.38576 * 119.22566 * 359.74263 * 7 6 5 19 19 C 1.50699 * 120.81596 * 179.97438 * 18 7 6 20 20 H 1.09004 * 109.46808 * 60.00452 * 1 2 3 21 21 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47603 * 300.00191 * 1 2 3 23 23 H 1.08002 * 119.65394 * 359.97438 * 4 3 2 24 24 H 1.08003 * 119.55746 * 180.24989 * 6 5 4 25 25 H 1.09001 * 109.47179 * 24.96854 * 8 7 6 26 26 H 1.09003 * 109.47553 * 144.97687 * 8 7 6 27 27 H 1.08993 * 109.46956 * 299.99900 * 9 8 7 28 28 H 1.08999 * 109.47125 * 60.00292 * 9 8 7 29 29 H 0.97002 * 119.99956 * 179.97438 * 13 12 10 30 30 H 1.09010 * 109.47002 * 270.02127 * 19 18 7 31 31 H 1.08994 * 109.47438 * 30.01734 * 19 18 7 32 32 H 1.08998 * 109.47894 * 150.02542 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8941 3.5574 -0.0061 6 6 3.2080 3.6722 -0.0010 7 6 4.0179 2.5523 -0.0004 8 6 5.5180 2.6964 0.0003 9 6 6.0383 2.6191 -1.4365 10 6 7.5383 2.7639 -1.4360 11 1 8.0676 2.8972 -0.5040 12 6 8.2351 2.7251 -2.6251 13 7 7.5906 2.5623 -3.7598 14 14 10.0946 2.9037 -2.6244 15 1 10.6966 1.8103 -1.8200 16 1 10.5996 2.8289 -4.0188 17 1 10.4656 4.2148 -2.0338 18 6 3.4345 1.2953 0.0001 19 6 4.2834 0.0502 0.0001 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.2213 2.3268 -0.0014 24 1 3.6570 4.6544 -0.0017 25 1 5.7904 3.6586 0.4340 26 1 5.9599 1.8935 0.5904 27 1 5.7659 1.6571 -1.8703 28 1 5.5965 3.4220 -2.0267 29 1 8.0808 2.5353 -4.5965 30 1 4.4880 -0.2500 -1.0276 31 1 5.2234 0.2513 0.5138 32 1 3.7528 -0.7514 0.5139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:24 Heat of formation + Delta-G solvation = -43.371281 kcal Electronic energy + Delta-G solvation = -14630.857292 eV Core-core repulsion = 12169.341801 eV Total energy + Delta-G solvation = -2461.515491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.75469 -39.18320 -36.46333 -34.81256 -33.05112 -30.67295 -28.80766 -28.39652 -26.84793 -23.87429 -23.30518 -21.69237 -18.77119 -18.38829 -18.14930 -17.14815 -16.85016 -16.49937 -15.40385 -15.04463 -14.76653 -14.57369 -14.18821 -13.83262 -13.69936 -13.58056 -13.29325 -12.77997 -12.72091 -12.58605 -12.34992 -12.29638 -11.78004 -11.70039 -11.27092 -10.53713 -10.38019 -10.01308 -9.34170 -8.17536 -6.29247 0.15987 0.27235 1.42936 1.45742 1.53499 2.25537 2.43242 2.77609 3.16082 3.55195 3.63615 3.85916 3.97305 4.20099 4.30336 4.40981 4.50283 4.58683 4.69668 4.71976 4.76366 4.88966 4.99015 5.12237 5.18049 5.36139 5.51817 5.62772 5.75139 5.85803 6.23616 6.27123 6.87402 6.95884 7.40317 8.93969 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046628 B = 0.006174 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.354800 B = 4533.758720 C = 4773.637906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.075 3.925 4 C 0.003 3.997 5 N -0.470 5.470 6 C 0.050 3.950 7 C -0.091 4.091 8 C -0.062 4.062 9 C 0.039 3.961 10 C -0.540 4.540 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.965 3.035 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.266 1.266 18 C -0.093 4.093 19 C -0.101 4.101 20 H 0.064 0.936 21 H 0.125 0.875 22 H 0.070 0.930 23 H 0.186 0.814 24 H 0.164 0.836 25 H 0.074 0.926 26 H 0.076 0.924 27 H -0.006 1.006 28 H -0.014 1.014 29 H 0.263 0.737 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.187 -4.473 8.825 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.027 3.973 4 C -0.155 4.155 5 N -0.179 5.179 6 C -0.107 4.107 7 C -0.093 4.093 8 C -0.100 4.100 9 C 0.002 3.998 10 C -0.578 4.578 11 H 0.084 0.916 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.101 4.101 19 C -0.157 4.157 20 H 0.082 0.918 21 H 0.143 0.857 22 H 0.089 0.911 23 H 0.202 0.798 24 H 0.181 0.819 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.012 0.988 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.616 -3.954 8.642 15.795 hybrid contribution 1.163 -0.428 -0.560 1.360 sum -11.454 -4.382 8.081 14.687 Atomic orbital electron populations 1.23445 0.76011 1.06069 1.02525 1.86049 1.23724 1.25264 1.88418 1.19885 0.92207 0.86532 0.98654 1.23229 1.01505 0.86646 1.04140 1.67506 1.12053 1.27374 1.11008 1.22703 0.88710 0.99132 1.00126 1.21000 0.98253 0.92813 0.97215 1.20568 0.88078 1.02547 0.98785 1.18874 0.94736 0.94952 0.91237 1.21656 0.93293 1.49569 0.93316 0.91560 1.25970 1.03780 0.94778 0.95186 1.70110 1.37822 1.51158 0.98437 0.85506 0.79219 0.79277 0.77086 1.18995 1.21188 1.19093 1.19867 0.91719 0.96519 1.02006 1.20617 0.98920 0.93768 1.02427 0.91762 0.85715 0.91099 0.79768 0.81881 0.90749 0.90589 0.98775 0.99537 0.92867 0.92000 0.90651 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.82 113.37 1.11 1.32 16 2 O -0.32 -8.39 9.68 -92.53 -0.90 -9.29 16 3 C 0.07 2.32 6.68 22.60 0.15 2.47 16 4 C 0.00 0.08 10.22 84.82 0.87 0.95 16 5 N -0.47 -16.06 10.36 -195.44 -2.02 -18.08 16 6 C 0.05 1.80 10.83 84.68 0.92 2.72 16 7 C -0.09 -3.43 5.15 -19.79 -0.10 -3.54 16 8 C -0.06 -2.54 4.84 29.85 0.14 -2.39 16 9 C 0.04 2.05 4.96 29.85 0.15 2.20 16 10 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 11 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 14 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 18 C -0.09 -3.28 5.93 -19.58 -0.12 -3.40 16 19 C -0.10 -3.31 9.37 71.24 0.67 -2.64 16 20 H 0.06 0.89 7.68 -2.39 -0.02 0.87 16 21 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.07 0.87 7.68 -2.39 -0.02 0.85 16 23 H 0.19 3.91 6.32 -2.91 -0.02 3.89 16 24 H 0.16 5.37 8.06 -2.91 -0.02 5.35 16 25 H 0.07 2.86 8.06 -2.39 -0.02 2.84 16 26 H 0.08 2.94 6.29 -2.39 -0.01 2.92 16 27 H -0.01 -0.35 8.04 -2.39 -0.02 -0.37 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.07 2.45 6.17 -2.39 -0.01 2.43 16 32 H 0.08 2.35 7.62 -2.39 -0.02 2.34 16 Total: -1.00 -67.43 272.95 4.98 -62.44 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.10 Total: 7.76 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.49 Total: -31.81 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -1.74 Total: -75.00 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.90 Total: -9.29 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.43 4.98 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.072 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds